Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_J15
(850 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2... 36 0.12
sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2... 34 0.45
sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2... 34 0.45
sp|Q8HEC1|NU2M_CAEBR NADH-ubiquinone oxidoreductase chain 2... 33 1.3
sp|P36161|NU133_YEAST Nucleoporin NUP133 (Nuclear pore prot... 31 5.0
sp|Q9J519|V216_FOWPV Putative ankyrin repeat protein FPV216 30 6.5
>sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 300
Score = 36.2 bits (82), Expect = 0.12
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = +1
Query: 133 NLVNYILVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIFRWFFLFL 273
N VN+ ++L + V F++ +FIKIF ++++F + L+ +F +FL
Sbjct: 195 NFVNWEVLLVFLNVPFSVSFFIKIFVLSEVFKLDGLFLLFLLLMMFL 241
>sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 282
Score = 34.3 bits (77), Expect = 0.45
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +1
Query: 133 NLVNYILVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIFRWFFLFL 273
N +N+ L + + F++ +F+KIF ++++F + +F F +FL
Sbjct: 196 NFINWETTLVFLNIPFSVSFFVKIFSLSEIFKYDSFFTLFLLFTMFL 242
>sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 333
Score = 34.3 bits (77), Expect = 0.45
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 154 VLACIYVRFNIVYFIKIFDINK-LFVIRVLYYIFRWFFLFLLLADYYKIHFLSL*GFATV 330
+LAC + FN YFI I ++NK +F+ ++ Y F +F L L + +F
Sbjct: 171 LLACSTI-FNSFYFIFILELNKNMFIAMIILYSFNYFLLISFLNKFNIQNF--------- 220
Query: 331 Y*KHFLFNNKFAL 369
+F+F NK+ +
Sbjct: 221 ---NFMFYNKYQM 230
>sp|Q8HEC1|NU2M_CAEBR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 282
Score = 32.7 bits (73), Expect = 1.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +1
Query: 133 NLVNYILVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIFRWFFLFL 273
N VN+ L + + F++ +F+KIF ++++F + + F +FL
Sbjct: 196 NFVNWETALVFLNIPFSVSFFVKIFSLSEIFKFDSFFTLLLLFSMFL 242
>sp|P36161|NU133_YEAST Nucleoporin NUP133 (Nuclear pore protein NUP133)
Length = 1157
Score = 30.8 bits (68), Expect = 5.0
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -3
Query: 101 KILSNYLLTQKRHLTTKA*IYNN 33
K LSNY LTQ HLTTK + N+
Sbjct: 616 KTLSNYNLTQNEHLTTKTVVINS 638
>sp|Q9J519|V216_FOWPV Putative ankyrin repeat protein FPV216
Length = 296
Score = 30.4 bits (67), Expect = 6.5
Identities = 10/47 (21%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 127 LVNLVNYILVLACIYVR-FNIVYFIKIFDINKLFVIRVLYYIFRWFF 264
+ +++N ++ + +Y+R F ++Y+I I N++ + +LY ++++
Sbjct: 3 ITSIINNLIDIITLYIRIFYVIYYIAIKSKNQICIANILYTSIKFYY 49
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,460,765
Number of Sequences: 369166
Number of extensions: 1037332
Number of successful extensions: 1616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1613
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)