Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_B18
(252 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2... 31 1.0
sp|O51425|LSPA_BORBU Lipoprotein signal peptidase (Prolipop... 29 3.8
>sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 333
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 19 VLACIYVRINSVYFIKIFDINK-LFVIRVLYYIFRWIFFVS 138
+LAC + NS YFI I ++NK +F+ ++ Y F + +S
Sbjct: 171 LLACSTI-FNSFYFIFILELNKNMFIAMIILYSFNYFLLIS 210
>sp|O51425|LSPA_BORBU Lipoprotein signal peptidase (Prolipoprotein signal peptidase)
(Signal peptidase II) (SPase II)
Length = 170
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Frame = +1
Query: 22 LACIYVRINSVYFIKIFDINKLFVIRV----------LYYIFRWIFFVSITSGLL*NTLF 171
L YV++ S+YF D ++ +R ++Y + IFF+++ +L +
Sbjct: 28 LVAKYVKLGSIYFSFFDDFFRIIHVRNTGILFSMGSNIHYSLKKIFFLAMPIFILIFVFY 87
Query: 172 ITLRFCNCLLKTFLI 216
++L+ NC+ + L+
Sbjct: 88 LSLKERNCIARISLL 102
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,760,539
Number of Sequences: 369166
Number of extensions: 360672
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)