Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_H02
(869 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2... 34 0.46
sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2... 33 1.0
sp|Q9J519|V216_FOWPV Putative ankyrin repeat protein FPV216 33 1.3
sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2... 32 1.8
sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6) 31 3.9
sp|P36161|NU133_YEAST Nucleoporin NUP133 (Nuclear pore prot... 31 5.1
sp|Q8HEC1|NU2M_CAEBR NADH-ubiquinone oxidoreductase chain 2... 31 5.1
sp|P04371|COX1_TRYBB Cytochrome c oxidase subunit 1 (Cytoch... 30 8.7
sp|Q8D342|ARNC_WIGBR Undecaprenyl-phosphate 4-deoxy-4-forma... 30 8.7
>sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 333
Score = 34.3 bits (77), Expect = 0.46
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +1
Query: 172 VLACIYVRFNIVYFIKIFDINK-LFVIRVLYYIFRWFFFVSIIS 300
+LAC + FN YFI I ++NK +F+ ++ Y F +F +S ++
Sbjct: 171 LLACSTI-FNSFYFIFILELNKNMFIAMIILYSFNYFLLISFLN 213
>sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 300
Score = 33.1 bits (74), Expect = 1.0
Identities = 14/40 (35%), Positives = 28/40 (70%)
Frame = +1
Query: 151 NLVNYILVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIF 270
N VN+ ++L + V F++ +FIKIF ++++F + L+ +F
Sbjct: 195 NFVNWEVLLVFLNVPFSVSFFIKIFVLSEVFKLDGLFLLF 234
>sp|Q9J519|V216_FOWPV Putative ankyrin repeat protein FPV216
Length = 296
Score = 32.7 bits (73), Expect = 1.3
Identities = 14/56 (25%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 145 LVNLVNYILVLACIYVR-FNIVYFIKIFDINKLFVIRVLYYIFRWFFFVSIISGLL 309
+ +++N ++ + +Y+R F ++Y+I I N++ + +LY + F++ II +L
Sbjct: 3 ITSIINNLIDIITLYIRIFYVIYYIAIKSKNQICIANILYTSIK-FYYTDIIDAVL 57
>sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 282
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 151 NLVNYILVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIFRWF-FFVSIIS 300
N +N+ L + + F++ +F+KIF ++++F + +F F F+S+++
Sbjct: 196 NFINWETTLVFLNIPFSVSFFVKIFSLSEIFKYDSFFTLFLLFTMFLSVLA 246
>sp|P24499|ATP6_TRYBB ATP synthase a chain (ATPase protein 6)
Length = 229
Score = 31.2 bits (69), Expect = 3.9
Identities = 38/134 (28%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Frame = +1
Query: 7 FLYYGC*IKLILFSRLL*IYALVVRCLFCVNK*LLNILV*W*Y--VFDLVNLVNYILVLA 180
FL++ C L LL +Y V R F V L ++ + +FDL V L L
Sbjct: 2 FLFFFC--DLFWLRLLLCMYYCVSRLCFIVYFNCLMLIFDFLLFCLFDLYLFVGLCLFLL 59
Query: 181 CIYVRFNIV-----YFIKIFDINKLFVIRVLYYIFRWFFFVSIISGLL*NTLFI------ 327
++ FN+ Y I ++ LF I L YI F F + L N L +
Sbjct: 60 LWFMLFNLYSLILYYCITYLNLYLLFCIVFLLYIAFLFLFCFLCDFFLFNNLLVGDSFMD 119
Query: 328 --TLRFCNCLLKTF 363
+RF C L+ F
Sbjct: 120 VFFIRFLLCFLECF 133
>sp|P36161|NU133_YEAST Nucleoporin NUP133 (Nuclear pore protein NUP133)
Length = 1157
Score = 30.8 bits (68), Expect = 5.1
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 119 KILSNYLLTQKRHLTTKA*IYNN 51
K LSNY LTQ HLTTK + N+
Sbjct: 616 KTLSNYNLTQNEHLTTKTVVINS 638
>sp|Q8HEC1|NU2M_CAEBR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 282
Score = 30.8 bits (68), Expect = 5.1
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 151 NLVNYILVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIFRWF-FFVSIIS 300
N VN+ L + + F++ +F+KIF ++++F + + F F+S+++
Sbjct: 196 NFVNWETALVFLNIPFSVSFFVKIFSLSEIFKFDSFFTLLLLFSMFLSVLA 246
>sp|P04371|COX1_TRYBB Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 549
Score = 30.0 bits (66), Expect = 8.7
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Frame = +1
Query: 1 VSFLYYGC*IKLILFSRLL*IYALVVRCLFCVNK*LLNILV*W*YVFDLVNLVNYIL--- 171
+SFL++ L+ LL + ++ C L N+++ W Y +NL Y L
Sbjct: 447 ISFLFWSA---FTLYGMLLLTFLVIFCCC------LFNVILFWDYCLFFINLFTYSLSIF 497
Query: 172 ------VLACIYVRFNIVYFIKIFDINKLFVIRVLYYIFRWFFFVSII 297
V C+ + ++ F I ++ L +I ++F FF+ + +
Sbjct: 498 FYFYTWVPVCMAIYLLVIDFAHII-LDYLLIILCFCFVFYIFFWQAFL 544
>sp|Q8D342|ARNC_WIGBR Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
(Undecaprenyl-phosphate Ara4FN transferase) (Ara4FN
transferase)
Length = 323
Score = 30.0 bits (66), Expect = 8.7
Identities = 21/79 (26%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +1
Query: 139 FDLVNLVNYILVLACIYVRFNIVYFIKIFDIN--KLFVIRVLYYIFRWFFFVSIISGLL* 312
++L+ L+ I L + FN++ K+F+I +F+ ++ +F + FF+ I +
Sbjct: 209 YNLIKLIKLIYDLF-FCISFNLIKKNKMFNIFIILIFLAVLMSIVFFFIFFLKIKLNIFY 267
Query: 313 NTLFITLRFCNCLLKTFLI 369
LFI + L+K+F+I
Sbjct: 268 KILFIPIIITLFLIKSFII 286
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,939,458
Number of Sequences: 369166
Number of extensions: 1075629
Number of successful extensions: 1540
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)