Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_N01
(708 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2... 35 0.20
sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2... 32 1.3
sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2... 32 2.2
sp|Q8D342|ARNC_WIGBR Undecaprenyl-phosphate 4-deoxy-4-forma... 31 2.8
sp|P36161|NU133_YEAST Nucleoporin NUP133 (Nuclear pore prot... 31 3.7
sp|Q9J519|V216_FOWPV Putative ankyrin repeat protein FPV216 31 3.7
sp|Q8HEC1|NU2M_CAEBR NADH-ubiquinone oxidoreductase chain 2... 31 3.7
>sp|P34849|NU2M_APILI NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 333
Score = 35.0 bits (79), Expect = 0.20
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 157 RVLACIYVRFNIVYFIKIFDINK-LFVIRVLYYIFRWFFFVSIIS 288
++LAC + FN YFI I ++NK +F+ ++ Y F +F +S ++
Sbjct: 170 KLLACSTI-FNSFYFIFILELNKNMFIAMIILYSFNYFLLISFLN 213
>sp|P24889|NU2M_CAEEL NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 282
Score = 32.3 bits (72), Expect = 1.3
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Frame = +1
Query: 139 NLVNYIRVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIFRWF-FFVSIIS 288
N +N+ L + + F++ +F+KIF ++++F + +F F F+S+++
Sbjct: 196 NFINWETTLVFLNIPFSVSFFVKIFSLSEIFKYDSFFTLFLLFTMFLSVLA 246
>sp|P24877|NU2M_ASCSU NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 300
Score = 31.6 bits (70), Expect = 2.2
Identities = 14/40 (35%), Positives = 27/40 (67%)
Frame = +1
Query: 139 NLVNYIRVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIF 258
N VN+ +L + V F++ +FIKIF ++++F + L+ +F
Sbjct: 195 NFVNWEVLLVFLNVPFSVSFFIKIFVLSEVFKLDGLFLLF 234
>sp|Q8D342|ARNC_WIGBR Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
(Undecaprenyl-phosphate Ara4FN transferase) (Ara4FN
transferase)
Length = 323
Score = 31.2 bits (69), Expect = 2.8
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Frame = +1
Query: 139 NLVNYIRVLACIY--VRFNIVYFIKIFDIN--KLFVIRVLYYIFRWFFFVSIISGLL*NT 306
NL+ I+++ ++ + FN++ K+F+I +F+ ++ +F + FF+ I +
Sbjct: 210 NLIKLIKLIYDLFFCISFNLIKKNKMFNIFIILIFLAVLMSIVFFFIFFLKIKLNIFYKI 269
Query: 307 LFITLRFCNCLLKTFLI 357
LFI + L+K+F+I
Sbjct: 270 LFIPIIITLFLIKSFII 286
>sp|P36161|NU133_YEAST Nucleoporin NUP133 (Nuclear pore protein NUP133)
Length = 1157
Score = 30.8 bits (68), Expect = 3.7
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -2
Query: 107 KILSNYLLTQKRHLTTKA*IYNN 39
K LSNY LTQ HLTTK + N+
Sbjct: 616 KTLSNYNLTQNEHLTTKTVVINS 638
>sp|Q9J519|V216_FOWPV Putative ankyrin repeat protein FPV216
Length = 296
Score = 30.8 bits (68), Expect = 3.7
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +1
Query: 133 LVNLVNYIRVLACIYVR-FNIVYFIKIFDINKLFVIRVLYYIFRWFFFVSIISGLL 297
+ +++N + + +Y+R F ++Y+I I N++ + +LY + F++ II +L
Sbjct: 3 ITSIINNLIDIITLYIRIFYVIYYIAIKSKNQICIANILYTSIK-FYYTDIIDAVL 57
>sp|Q8HEC1|NU2M_CAEBR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 282
Score = 30.8 bits (68), Expect = 3.7
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 139 NLVNYIRVLACIYVRFNIVYFIKIFDINKLFVIRVLYYIFRWF-FFVSIIS 288
N VN+ L + + F++ +F+KIF ++++F + + F F+S+++
Sbjct: 196 NFVNWETALVFLNIPFSVSFFVKIFSLSEIFKFDSFFTLLLLFSMFLSVLA 246
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,703,374
Number of Sequences: 369166
Number of extensions: 856193
Number of successful extensions: 1217
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6219306880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)