Planarian EST Database

Dr_sW_004_A13

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_004_A13
         (530 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9KSX4|HIS1_VIBCH  ATP phosphoribosyltransferase (ATP-PRT...    29   6.2  

>sp|Q9KSX4|HIS1_VIBCH ATP phosphoribosyltransferase (ATP-PRTase) (ATP-PRT)
          Length = 298

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = -3

Query: 213 LIFKLHLYRKFKLIKHIIILENTSMETCGVVNEMCSPNSLLVNASNENMLPPKLDKSKIN 34
           L+ ++H  ++ K  K+I++           V ++    +LL  A +  +LP   DKSK+ 
Sbjct: 212 LLTRMHGVQQAKESKYIMLH--------APVEKLAQIKTLLPGAEDPTVLPLSADKSKVA 263

Query: 33  VHFEDSE 13
           VH   SE
Sbjct: 264 VHMVSSE 270

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,294,244
Number of Sequences: 369166
Number of extensions: 820326
Number of successful extensions: 1524
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1523
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)