Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_M04
(411 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q72TD6|YA85_LEPIC Hypothetical RNA methyltransferase LIC... 28 5.5
sp|Q8F201|YT77_LEPIN Hypothetical RNA methyltransferase LA2977 28 5.5
>sp|Q72TD6|YA85_LEPIC Hypothetical RNA methyltransferase LIC11085
Length = 454
Score = 28.5 bits (62), Expect = 5.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 318 TKTN*ASAPKLNYNSTSR*KTNFLIRTPKKYFPVIPKEA**QTSFKHKNR 169
TK A ++Y R KT+ L+ + KK F ++P Q +F ++NR
Sbjct: 77 TKCGGCCAQHISYQDQFRYKTSSLLESYKKDFEIVPTLYPAQKTFYYRNR 126
>sp|Q8F201|YT77_LEPIN Hypothetical RNA methyltransferase LA2977
Length = 454
Score = 28.5 bits (62), Expect = 5.5
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 318 TKTN*ASAPKLNYNSTSR*KTNFLIRTPKKYFPVIPKEA**QTSFKHKNR 169
TK A ++Y R KT+ L+ + KK F ++P Q +F ++NR
Sbjct: 77 TKCGGCCAQHISYQDQFRYKTSSLLESYKKDFEIVPTLYPAQKTFYYRNR 126
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,602,171
Number of Sequences: 369166
Number of extensions: 436402
Number of successful extensions: 498
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)