DrC_00471
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00471 (805 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-ace... 96 1e-19 sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N... 95 2e-19 sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX 94 6e-19 sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX 94 6e-19 sp|P76421|YEGX_ECOLI Hypothetical protein yegX 93 1e-18 sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmu... 67 7e-11 sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH) 48 3e-05 sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9... 33 1.2 sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7... 32 2.7 sp|P68752|MATK_LILSU Maturase K (Intron maturase) >gi|56749... 31 3.5
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1) Length = 294 Score = 95.5 bits (236), Expect = 1e-19 Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 7/196 (3%) Frame = +3 Query: 69 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHYYL 248 GIDVSH G I+W+ VK AG SF +IK+++G +Y D +N+ +A G +H+ Sbjct: 84 GIDVSHWQGSINWSSVKSAGMSFAYIKATEGTNYKDDRFSANYTNAYNAGIIRGAYHFAR 143 Query: 249 PTVLYKTQLENIVRICSKVAAKPYAI---ALGVEESAQGK----ISKAQYSDDIYSFLQL 407 P T + ++ L +E + G +S Q I F Sbjct: 144 PNASSGTAQADYFASNGGGWSRDNRTLPGVLDIEHNPSGAMCYGLSTTQMRTWINDFHAR 203 Query: 408 LRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYS 587 +++ + + IYT+ S+WN K WV+H+ P +P + WT WQYS Sbjct: 204 YKARTTRDVVIYTTASWWNTCTGSWNGMAAKSPFWVAHW-GVSAPTVPSGFPTWTFWQYS 262 Query: 588 GIGKVNGIKGNVDLNR 635 G+V G+ G+VD N+ Sbjct: 263 ATGRVGGVSGDVDRNK 278
>sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin) Length = 342 Score = 95.1 bits (235), Expect = 2e-19 Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 1/192 (0%) Frame = +3 Query: 69 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHYYL 248 GIDVS+ G I++ VK G V+IK+++G + D N+ A KVG +H++ Sbjct: 11 GIDVSNWQGNINFKSVKNEGIEVVYIKATEGDYFKDSYAKQNYKRAKAEGLKVGFYHFFK 70 Query: 249 PTVLYKTQLENIVRICSKVAAKPYAIALGVE-ESAQGKISKAQYSDDIYSFLQLLRSKFS 425 P K Q + + +++ A Y L ++ E+ +G+ S + + FL+ +R + Sbjct: 71 PNKNAKRQAKYFIDYLNEIGATDYDCKLALDVETTEGR-SAYELTTMCIEFLEEVRKITN 129 Query: 426 SHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKVN 605 + +YT SF N+N+D + Y LW++ Y + P W+ W +QYS G V Sbjct: 130 REVVVYTYTSFANNNLD---NRLGVYPLWIAEY-GVKAPKDNRVWSSWIGFQYSDKGNVA 185 Query: 606 GIKGNVDLNRLQ 641 G+ GN D+N + Sbjct: 186 GVSGNCDMNEFK 197
>sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX Length = 272 Score = 93.6 bits (231), Expect = 6e-19 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 5/194 (2%) Frame = +3 Query: 66 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 230 +GIDVS +IDW +V G F FIK+++G VDP NW + +N G Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127 Query: 231 VHHYYLPTVLYKTQLENIVRICSKVAAKPYAIALGVEESAQGKISKAQYSDDIYSFLQLL 410 +HY+ P+V Q ++ + + L VEE +GK+S + + +L+++ Sbjct: 128 AYHYFSPSVAAPVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184 Query: 411 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 590 IY+ F++ N+ F +Y WV+HY +R + W WQ+S Sbjct: 185 EKSTGKKPVIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238 Query: 591 IGKVNGIKGNVDLN 632 G+V+GI G+VD N Sbjct: 239 RGQVDGINGSVDFN 252
>sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX Length = 272 Score = 93.6 bits (231), Expect = 6e-19 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 5/194 (2%) Frame = +3 Query: 66 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 230 +GIDVS +IDW +V G F FIK+++G VDP NW + +N G Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127 Query: 231 VHHYYLPTVLYKTQLENIVRICSKVAAKPYAIALGVEESAQGKISKAQYSDDIYSFLQLL 410 +HY+ P+V Q ++ + + L VEE +GK+S + + +L+++ Sbjct: 128 AYHYFSPSVSASVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184 Query: 411 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 590 + IY+ F++ N+ F +Y WV+HY +R + W WQ+S Sbjct: 185 EKRTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238 Query: 591 IGKVNGIKGNVDLN 632 G+V+GI G VD N Sbjct: 239 RGQVDGINGPVDFN 252
>sp|P76421|YEGX_ECOLI Hypothetical protein yegX Length = 272 Score = 92.8 bits (229), Expect = 1e-18 Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 5/194 (2%) Frame = +3 Query: 66 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 230 +GIDVS +IDW +V G F FIK+++G VDP NW + +N G Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127 Query: 231 VHHYYLPTVLYKTQLENIVRICSKVAAKPYAIALGVEESAQGKISKAQYSDDIYSFLQLL 410 +HY+ P+V Q ++ + + L VEE +GK+S + + +L+++ Sbjct: 128 AYHYFSPSVSASVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184 Query: 411 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 590 IY+ F++ N+ F +Y WV+HY +R + W WQ+S Sbjct: 185 EKSTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238 Query: 591 IGKVNGIKGNVDLN 632 G+V+GI G VD N Sbjct: 239 RGQVDGINGPVDFN 252
>sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin) Length = 324 Score = 66.6 bits (161), Expect = 7e-11 Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 3/191 (1%) Frame = +3 Query: 69 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHYYL 248 GID+ G +D+ VK +G V+IK+++G +Y D ++ A K+G +HY Sbjct: 3 GIDIYSGQGSVDFNAVKESGVEVVYIKATEGLTYTDSTYKDFYDGAKNAGLKIGFYHYLR 62 Query: 249 ---PTVLYKTQLENIVRICSKVAAKPYAIALGVEESAQGKISKAQYSDDIYSFLQLLRSK 419 PT ++ E+ S ++ A+ VE + I Q S ++ F L +K Sbjct: 63 ANDPT----SEAEHFFNTISGLSL-DCKCAIDVEVTLGQSID--QISSNVRKFADYLINK 115 Query: 420 FSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIGK 599 + +YT +F+ DN++ D LW++ Y + P + +QYS G Sbjct: 116 -GLDVCVYTYTNFYKDNLNSTVKDLP---LWIAEYGVSK----PNIDASYVGFQYSDSGS 167 Query: 600 VNGIKGNVDLN 632 VNGI G+ DL+ Sbjct: 168 VNGISGSADLD 178
>sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH) Length = 211 Score = 48.1 bits (113), Expect = 3e-05 Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 16/202 (7%) Frame = +3 Query: 69 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALK---NQFKVGVHH 239 G D+S + +++A AG FV IK+++G SY +P S +N A N F G +H Sbjct: 4 GFDISSYQPSVNFAGAYSAGARFVIIKATEGTSYTNPSFSSQYNGATTATGNYFIRGGYH 63 Query: 240 YYLP-TVLYKTQLENIVRICSKVAAKPYAIALGVEESAQGK------ISKAQYSDDIYSF 398 + P Q + + + + ++ ++G +S A I +F Sbjct: 64 FAHPGETTGAAQADYFIAHGGGWSGDGITLPGMLDLESEGSNPACWGLSAASMVAWIKAF 123 Query: 399 LQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDF--TKYLLWVSHYTNKRQPYMPGNWTKWT 572 + + +YT+ S+W+ + + F T L+ + Y + +PG W T Sbjct: 124 SDRYHAVTGRYPMLYTNPSWWS-SCTGNSNAFVNTNPLVLANRYASAPGT-IPGGWPYQT 181 Query: 573 MWQ----YSGIGKVNGIKGNVD 626 +WQ Y+ G N I G++D Sbjct: 182 IWQNSDAYAYGGSNNFINGSID 203
>sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9 lysin) Length = 339 Score = 32.7 bits (73), Expect = 1.2 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 7/179 (3%) Frame = +3 Query: 72 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHYYLP 251 IDVS HNG ++ G + +K S+ +Y++P L + ++ +G +H+ Sbjct: 9 IDVSSHNGYDITGILEQMGTTNTIVKISESTTYLNPCLSAQ----VEQSTPIGFYHFARF 64 Query: 252 TVLYKTQLENIVRICSKVAAKPYAIALGVEESAQGKISKAQYSDDIYSFLQLLRSKFSSH 431 V + + L E+ G + ++ F+Q++ + Sbjct: 65 GGDVAEAEREAQFFLDNVPTQVKYLVLDYEDDPSG--NAQANTNACLRFMQMIADAGYTP 122 Query: 432 IFIYTSKSFWNDNIDWKR--HDFTKYLLWVSHY----TNKRQPYMPG-NWTKWTMWQYS 587 I+ Y+ K F DN+D+++ F LW++ Y N Y P + +W WQYS Sbjct: 123 IY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGNADFEYFPSMDGIRW--WQYS 177
>sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7 lysin) Length = 342 Score = 31.6 bits (70), Expect = 2.7 Identities = 38/179 (21%), Positives = 74/179 (41%), Gaps = 7/179 (3%) Frame = +3 Query: 72 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHYYLP 251 +DV+ H G ++ AG + IK S+ SY++P L + + +G +H+ Sbjct: 9 VDVASHQGYDISGILEEAGTTNTIIKVSESTSYLNPCLSAQ----VSQSNPIGFYHFACF 64 Query: 252 TVLYKTQLENIVRICSKVAAKPYAIALGVEESAQGKISKAQYSDDIYSFLQLLRSKFSSH 431 + V + + L E+ A + + + F+Q++ + Sbjct: 65 GGNEEEAEAEARYFLDNVPTQVKYLVLDYEDHASASVQR--NTTACLRFMQMIAEAGYTP 122 Query: 432 IFIYTSKSFWNDNIDWKR--HDFTKYLLWVSHY-----TNKRQPYMPGNWTKWTMWQYS 587 I+ Y+ K F DN+D+++ F LW++ Y T + + + +W WQYS Sbjct: 123 IY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGTANFEYFPSMDGIRW--WQYS 177
>sp|P68752|MATK_LILSU Maturase K (Intron maturase) sp|P68751|MATK_LILMI Maturase K (Intron maturase) sp|P68750|MATK_LILCA Maturase K (Intron maturase) Length = 512 Score = 31.2 bits (69), Expect = 3.5 Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 4/116 (3%) Frame = +3 Query: 90 NGKIDWAKVKGAGY----SFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHYYLPTV 257 NG I + ++ GY S V +K Y L+ ND+ +N+F +++Y Sbjct: 38 NGSIFYEPIEFIGYDNKFSLVLVKRLITRMYQQNFLIYLVNDSNQNRFGGHTNYFYSHFF 97 Query: 258 LYKTQLENIVRICSKVAAKPYAIALGVEESAQGKISKAQYSDDIYSFLQLLRSKFS 425 K + + S + P+++ L V S + +I K+Q I+S L K S Sbjct: 98 YSKM----VSKGFSVIVEIPFSLRL-VSSSEEKEIPKSQNLGSIHSIFPFLEDKLS 148
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,327,101
Number of Sequences: 369166
Number of extensions: 1770042
Number of successful extensions: 4365
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4345
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
