Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_L19
(802 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N... 82 2e-15
sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-ace... 77 4e-14
sp|P76421|YEGX_ECOLI Hypothetical protein yegX 73 1e-12
sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX 72 1e-12
sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX 72 1e-12
sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmu... 53 8e-07
sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9... 37 0.048
sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1... 37 0.063
sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7... 36 0.11
sp|Q889X4|EFG_PSESM Elongation factor G (EF-G) 32 2.6
>sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N-acetylmuramidase)
(Autolysin)
Length = 342
Score = 82.0 bits (201), Expect = 2e-15
Identities = 52/191 (27%), Positives = 86/191 (45%)
Frame = +3
Query: 66 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYYL 245
GIDVS+ G I++ VK G V+IK+++G + D N+ A KVG YH++
Sbjct: 11 GIDVSNWQGNINFKSVKNEGIEVVYIKATEGDYFKDSYAKQNYKRAKAEGLKVGFYHFFK 70
Query: 246 PTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRSNFSS 425
P K Q + +++ A Y L ++ S + + FL+ +R +
Sbjct: 71 PNKNAKRQAKYFIDYLNEIGATDYDCKLALDVETTEGRSAYELTTMCIEFLEEVRKITNR 130
Query: 426 HIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYSXXXXXXX 605
+ +YT SF N+N+D + Y LW+++Y K P W+ W +QYS
Sbjct: 131 EVVVYTYTSFANNNLD---NRLGVYPLWIAEYGVKA-PKDNRVWSSWIGFQYSDKGNVAG 186
Query: 606 XXXXXDLNRLQ 638
D+N +
Sbjct: 187 VSGNCDMNEFK 197
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1)
Length = 294
Score = 77.4 bits (189), Expect = 4e-14
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 7/180 (3%)
Frame = +3
Query: 66 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYYL 245
GIDVSH G I+W+ VK AG SF +IK+++G +Y D +N+ +A G YH+
Sbjct: 84 GIDVSHWQGSINWSSVKSAGMSFAYIKATEGTNYKDDRFSANYTNAYNAGIIRGAYHFAR 143
Query: 246 PTVLYKT-QFDNIVRICSKVAAKPYAI--ALGVEDSAQGK----ISKAQYSDDIYSFLQL 404
P T Q D + + L +E + G +S Q I F
Sbjct: 144 PNASSGTAQADYFASNGGGWSRDNRTLPGVLDIEHNPSGAMCYGLSTTQMRTWINDFHAR 203
Query: 405 LRSNFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 584
++ + + IYT+ S+WN K WV+ + P +P + WT WQYS
Sbjct: 204 YKARTTRDVVIYTTASWWNTCTGSWNGMAAKSPFWVAHW-GVSAPTVPSGFPTWTFWQYS 262
>sp|P76421|YEGX_ECOLI Hypothetical protein yegX
Length = 272
Score = 72.8 bits (177), Expect = 1e-12
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 5/179 (2%)
Frame = +3
Query: 63 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 227
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 228 VYHYYLPTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLL 407
YHY+ P+V Q ++ + + L VE+ +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184
Query: 408 RSNFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 584
+ IY+ F++ N+ F +Y WV+ Y + +P G W WQ+S
Sbjct: 185 EKSTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQR-RPDNDG--MAWRFWQHS 237
>sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX
Length = 272
Score = 72.4 bits (176), Expect = 1e-12
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 5/179 (2%)
Frame = +3
Query: 63 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 227
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 228 VYHYYLPTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLL 407
YHY+ P+V Q ++ + + L VE+ +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVAAPVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184
Query: 408 RSNFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 584
+ IY+ F++ N+ F +Y WV+ Y + +P G W WQ+S
Sbjct: 185 EKSTGKKPVIYSGAVFYHTNL---AGYFNEYPWWVAHYYQR-RPDNDG--MAWRFWQHS 237
>sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX
Length = 272
Score = 72.4 bits (176), Expect = 1e-12
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Frame = +3
Query: 63 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 227
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 228 VYHYYLPTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLL 407
YHY+ P+V Q ++ + + L VE+ +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184
Query: 408 RSNFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 584
IY+ F++ N+ F +Y WV+ Y + +P G W WQ+S
Sbjct: 185 EKRTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQR-RPDNDG--MAWRFWQHS 237
>sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin)
Length = 324
Score = 53.1 bits (126), Expect = 8e-07
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Frame = +3
Query: 66 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYYL 245
GID+ G +D+ VK +G V+IK+++G +Y D ++ A K+G YHY
Sbjct: 3 GIDIYSGQGSVDFNAVKESGVEVVYIKATEGLTYTDSTYKDFYDGAKNAGLKIGFYHYLR 62
Query: 246 ---PTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRSN 416
PT + F+ I + + A+ VE + I Q S ++ F L N
Sbjct: 63 ANDPTSEAEHFFNTISGL-----SLDCKCAIDVEVTLGQSID--QISSNVRKFADYL-IN 114
Query: 417 FSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDY 521
+ +YT +F+ DN++ D LW+++Y
Sbjct: 115 KGLDVCVYTYTNFYKDNLNSTVKDLP---LWIAEY 146
>sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9 lysin)
Length = 339
Score = 37.4 bits (85), Expect = 0.048
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 12/184 (6%)
Frame = +3
Query: 69 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYY-- 242
IDVS HNG ++ G + +K S+ +Y++P L + ++ +G YH+
Sbjct: 9 IDVSSHNGYDITGILEQMGTTNTIVKISESTTYLNPCLSAQ----VEQSTPIGFYHFARF 64
Query: 243 ---LPTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRS 413
+ + QF V + + L ED G + ++ F+Q++
Sbjct: 65 GGDVAEAEREAQF-----FLDNVPTQVKYLVLDYEDDPSG--NAQANTNACLRFMQMIAD 117
Query: 414 NFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSDY----TNKGQPYMPG-NWTKWTM 572
+ I+ Y+ K F DN+D+++ F LW++ Y N Y P + +W
Sbjct: 118 AGYTPIY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGNADFEYFPSMDGIRW-- 173
Query: 573 WQYS 584
WQYS
Sbjct: 174 WQYS 177
>sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1 lysin)
Length = 339
Score = 37.0 bits (84), Expect = 0.063
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 12/184 (6%)
Frame = +3
Query: 69 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYY-- 242
+DVS HNG ++ G + IK S+ +Y++P L + ++ +G YH+
Sbjct: 9 VDVSSHNGYDITGILEQMGTTNTIIKISESTTYLNPCLSAQ----VEQSNPIGFYHFARF 64
Query: 243 ---LPTVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRS 413
+ + QF V + + L ED G ++ F+Q++
Sbjct: 65 GGDVAEAEREAQF-----FLDNVPMQVKYLVLDYEDDPSG--DAQANTNACLRFMQMIAD 117
Query: 414 NFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSDY-TNKGQ---PYMPG-NWTKWTM 572
I+ Y+ K F +DN+D+++ F LW++ Y N G Y P + +W
Sbjct: 118 AGYKPIY-YSYKPFTHDNVDYQQILAQFPN-SLWIAGYGLNDGTANFEYFPSMDGIRW-- 173
Query: 573 WQYS 584
WQYS
Sbjct: 174 WQYS 177
>sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7 lysin)
Length = 342
Score = 36.2 bits (82), Expect = 0.11
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 7/179 (3%)
Frame = +3
Query: 69 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYYLP 248
+DV+ H G ++ AG + IK S+ SY++P L + + +G YH+
Sbjct: 9 VDVASHQGYDISGILEEAGTTNTIIKVSESTSYLNPCLSAQ----VSQSNPIGFYHFACF 64
Query: 249 TVLYKTQFDNIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRSNFSSH 428
+ V + + L ED A + + + F+Q++ +
Sbjct: 65 GGNEEEAEAEARYFLDNVPTQVKYLVLDYEDHASASVQR--NTTACLRFMQMIAEAGYTP 122
Query: 429 IFIYTSKSFWNDNIDWKR--HDFTKYLLWVSDY-TNKGQ---PYMPG-NWTKWTMWQYS 584
I+ Y+ K F DN+D+++ F LW++ Y N G Y P + +W WQYS
Sbjct: 123 IY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGTANFEYFPSMDGIRW--WQYS 177
>sp|Q889X4|EFG_PSESM Elongation factor G (EF-G)
Length = 701
Score = 31.6 bits (70), Expect = 2.6
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +3
Query: 156 GASYVDPMLVSNWNDALKNQFKVGVYHYYLPTVLYKTQFD----NIVRICSKVAAK---- 311
G S V+P + W A K Y +P ++Y + D N +R+ +++ +
Sbjct: 116 GTSGVEPQSETVWRQANK---------YGVPRIVYVNKMDRAGANFLRVIAQIKQRLGHT 166
Query: 312 --PYAIALGVEDSAQGKI 359
P +A+G ED+ QG+I
Sbjct: 167 PVPIQLAIGAEDNFQGQI 184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,208,938
Number of Sequences: 369166
Number of extensions: 1756929
Number of successful extensions: 4239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4227
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)