Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_N06
(594 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N... 63 6e-10
sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-ace... 57 5e-08
sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX 53 5e-07
sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX 53 5e-07
sp|P76421|YEGX_ECOLI Hypothetical protein yegX 52 9e-07
sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmu... 42 0.002
sp|Q12618|ACO1_AJECA Acyl-CoA desaturase (Stearoyl-CoA desa... 26 6.3
sp|Q02147|HISZ_LACLA ATP phosphoribosyltransferase regulato... 29 7.8
>sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N-acetylmuramidase)
(Autolysin)
Length = 342
Score = 62.8 bits (151), Expect = 6e-10
Identities = 37/136 (27%), Positives = 64/136 (47%)
Frame = +3
Query: 6 HHSYLPTVLYKRQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLR 185
+H + P KRQ + + +++ A Y L ++V S + + FL+ +R
Sbjct: 66 YHFFKPNKNAKRQAKYFIDYLNEIGATDYDCKLALDVETTEGRSAYELTTMCIEFLEEVR 125
Query: 186 SKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGI 365
+ + +YT SF N+N+D + Y LW++ Y + P W+ W +QYS
Sbjct: 126 KITNREVVVYTYTSFANNNLD---NRLGVYPLWIAEY-GVKAPKDNRVWSSWIGFQYSDK 181
Query: 366 GKVNGIKGNVDLNRLQ 413
G V G+ GN D+N +
Sbjct: 182 GNVAGVSGNCDMNEFK 197
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1)
Length = 294
Score = 56.6 bits (135), Expect = 5e-08
Identities = 29/92 (31%), Positives = 45/92 (48%)
Frame = +3
Query: 132 ISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQ 311
+S Q I F +++ + + IYT+ S+WN K WV+H+
Sbjct: 188 LSTTQMRTWINDFHARYKARTTRDVVIYTTASWWNTCTGSWNGMAAKSPFWVAHW-GVSA 246
Query: 312 PYMPGNWTKWTMWQYSGIGKVNGIKGNVDLNR 407
P +P + WT WQYS G+V G+ G+VD N+
Sbjct: 247 PTVPSGFPTWTFWQYSATGRVGGVSGDVDRNK 278
>sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX
Length = 272
Score = 53.1 bits (126), Expect = 5e-07
Identities = 28/99 (28%), Positives = 50/99 (50%)
Frame = +3
Query: 108 VEVSAQGKISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWV 287
++V +GK+S + + +L+++ IY+ F++ N+ F +Y WV
Sbjct: 160 LDVEERGKLSAKELRKRVSQWLKMVEKSTGKKPVIYSGAVFYHTNLAGY---FNEYPWWV 216
Query: 288 SHYTNKRQPYMPGNWTKWTMWQYSGIGKVNGIKGNVDLN 404
+HY +R + W WQ+S G+V+GI G+VD N
Sbjct: 217 AHYYQRRPD---NDGMAWRFWQHSDRGQVDGINGSVDFN 252
>sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX
Length = 272
Score = 53.1 bits (126), Expect = 5e-07
Identities = 28/99 (28%), Positives = 50/99 (50%)
Frame = +3
Query: 108 VEVSAQGKISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWV 287
++V +GK+S + + +L+++ + IY+ F++ N+ F +Y WV
Sbjct: 160 LDVEERGKLSAKELRKRVSQWLKMVEKRTGKKPIIYSGAVFYHTNLAGY---FNEYPWWV 216
Query: 288 SHYTNKRQPYMPGNWTKWTMWQYSGIGKVNGIKGNVDLN 404
+HY +R + W WQ+S G+V+GI G VD N
Sbjct: 217 AHYYQRRPD---NDGMAWRFWQHSDRGQVDGINGPVDFN 252
>sp|P76421|YEGX_ECOLI Hypothetical protein yegX
Length = 272
Score = 52.4 bits (124), Expect = 9e-07
Identities = 28/99 (28%), Positives = 49/99 (49%)
Frame = +3
Query: 108 VEVSAQGKISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWV 287
++V +GK+S + + +L+++ IY+ F++ N+ F +Y WV
Sbjct: 160 LDVEERGKLSAKELRKRVSQWLKMVEKSTGKKPIIYSGAVFYHTNLAGY---FNEYPWWV 216
Query: 288 SHYTNKRQPYMPGNWTKWTMWQYSGIGKVNGIKGNVDLN 404
+HY +R + W WQ+S G+V+GI G VD N
Sbjct: 217 AHYYQRRPD---NDGMAWRFWQHSDRGQVDGINGPVDFN 252
>sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin)
Length = 324
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/102 (30%), Positives = 49/102 (48%)
Frame = +3
Query: 99 ALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYL 278
A+ VEV+ I Q S ++ F L +K + +YT +F+ DN++ D
Sbjct: 87 AIDVEVTLGQSID--QISSNVRKFADYLINK-GLDVCVYTYTNFYKDNLNSTVKDLP--- 140
Query: 279 LWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKVNGIKGNVDLN 404
LW++ Y + P + +QYS G VNGI G+ DL+
Sbjct: 141 LWIAEYGVSK----PNIDASYVGFQYSDSGSVNGISGSADLD 178
>sp|Q12618|ACO1_AJECA Acyl-CoA desaturase (Stearoyl-CoA desaturase) (Fatty acid
desaturase) (Delta(9)-desaturase)
Length = 476
Score = 26.2 bits (56), Expect(2) = 6.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 201 HIFIYTSKSFWNDNIDWKRHDFTKYLLWV 287
H F + S + + I+W ++D TK+ +W+
Sbjct: 275 HNFHHEFPSDYRNAIEWHQYDPTKWTIWI 303
Score = 21.9 bits (45), Expect(2) = 6.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 333 TKWTMWQYSGIGKVNGIK 386
TKWT+W + +G +K
Sbjct: 297 TKWTIWIWKQLGLAYDLK 314
>sp|Q02147|HISZ_LACLA ATP phosphoribosyltransferase regulatory subunit
Length = 328
Score = 29.3 bits (64), Expect = 7.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -2
Query: 143 GFRYFSLCTHFHAKSYSVWFCCHL*T 66
G RY L ++F +++++ FCCH+ T
Sbjct: 288 GGRYDQLLSNFQEEAFAIGFCCHMDT 313
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,152,087
Number of Sequences: 369166
Number of extensions: 1198987
Number of successful extensions: 2975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2966
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)