Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_E15
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-ace... 36 0.038
sp|Q7MYY5|Y9D1_PHOLL Hypothetical UPF0090 protein plu4531 30 3.5
sp|Q64399|TOP2B_CRILO DNA topoisomerase 2-beta (DNA topoiso... 29 6.1
sp|Q64511|TOP2B_MOUSE DNA topoisomerase 2-beta (DNA topoiso... 29 6.1
sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta (DNA topoiso... 29 6.1
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1)
Length = 294
Score = 36.2 bits (82), Expect = 0.038
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 161 FWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKV 256
FWV+H+ P +P + WT WQYS G+V
Sbjct: 237 FWVAHW-GVSAPTVPSGFPTWTFWQYSATGRV 267
>sp|Q7MYY5|Y9D1_PHOLL Hypothetical UPF0090 protein plu4531
Length = 152
Score = 29.6 bits (65), Expect = 3.5
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -3
Query: 372 KLNIMIFCLIIMMGFTLIINDFVNSKLKTIKIYI-TFNSITL 250
KL MI + +GF L+ +F+ +++ T++IYI + N IT+
Sbjct: 9 KLTAMISAPVEALGFELVGLEFIRARVSTLRIYIDSENGITV 50
>sp|Q64399|TOP2B_CRILO DNA topoisomerase 2-beta (DNA topoisomerase II, beta isozyme)
Length = 1612
Score = 28.9 bits (63), Expect = 6.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 451 IYITKFIVNTVFIKASRIQRKTIMNNKIKYYDILFNHYDG 332
I+ TKF V T + ++T MNN +K + H+DG
Sbjct: 181 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDG 220
>sp|Q64511|TOP2B_MOUSE DNA topoisomerase 2-beta (DNA topoisomerase II, beta isozyme)
Length = 1612
Score = 28.9 bits (63), Expect = 6.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 451 IYITKFIVNTVFIKASRIQRKTIMNNKIKYYDILFNHYDG 332
I+ TKF V T + ++T MNN +K + H+DG
Sbjct: 181 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDG 220
>sp|Q02880|TOP2B_HUMAN DNA topoisomerase 2-beta (DNA topoisomerase II, beta isozyme)
Length = 1626
Score = 28.9 bits (63), Expect = 6.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 451 IYITKFIVNTVFIKASRIQRKTIMNNKIKYYDILFNHYDG 332
I+ TKF V T + ++T MNN +K + H+DG
Sbjct: 193 IFSTKFTVETACKEYKHSFKQTWMNNMMKTSEAKIKHFDG 232
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,381,993
Number of Sequences: 369166
Number of extensions: 986307
Number of successful extensions: 2606
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2606
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)