Planarian EST Database


Dr_sW_028_C16

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_028_C16
         (584 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26836|LYS_CLOPE  Probable autolytic lysozyme (1,4-beta-N...    82   1e-15
sp|P25310|LYSM1_STRGL  Lysozyme M1 precursor (1,4-beta-N-ace...    76   5e-14
sp|Q8FFY2|YEGX_ECOL6  Hypothetical protein yegX                    74   2e-13
sp|P76421|YEGX_ECOLI  Hypothetical protein yegX                    74   3e-13
sp|Q8X7H0|YEGX_ECO57  Hypothetical protein yegX                    73   5e-13
sp|P34020|LYS_CLOAB  Autolytic lysozyme (1,4-beta-N-acetylmu...    54   4e-07
sp|P00721|LYS_CHASP  N,O-diacetylmuramidase (Lysozyme CH)          44   2e-04
sp|P19386|LYS_BPCP9  Lysozyme (Endolysin) (Muramidase) (CP-9...    32   1.5  
sp|P15057|LYS_BPCP1  Lysozyme (Endolysin) (Muramidase) (CP-1...    30   3.4  
sp|Q9TN87|MATK_RUSAC  Maturase K (Intron maturase)                 30   4.4  
>sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N-acetylmuramidase)
           (Autolysin)
          Length = 342

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 50/176 (28%), Positives = 84/176 (47%)
 Frame = +3

Query: 54  GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYL 233
           GIDVS+  G I++  VK  G   V+IK+++G  + D     N+  A     KVG +H + 
Sbjct: 11  GIDVSNWQGNINFKSVKNEGIEVVYIKATEGDYFKDSYAKQNYKRAKAEGLKVGFYHFFK 70

Query: 234 PTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSS 413
           P    K+Q +  +   +++ A  Y   L ++V      S  + +     FL+ +R   + 
Sbjct: 71  PNKNAKRQAKYFIDYLNEIGATDYDCKLALDVETTEGRSAYELTTMCIEFLEEVRKITNR 130

Query: 414 HIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIG 581
            + +YT  SF N+N+D   +    Y LW++ Y   + P     W+ W  +QYS  G
Sbjct: 131 EVVVYTYTSFANNNLD---NRLGVYPLWIAEY-GVKAPKDNRVWSSWIGFQYSDKG 182
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1)
          Length = 294

 Score = 76.3 bits (186), Expect = 5e-14
 Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 7/184 (3%)
 Frame = +3

Query: 54  GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYL 233
           GIDVSH  G I+W+ VK AG SF +IK+++G +Y D    +N+ +A       G +H   
Sbjct: 84  GIDVSHWQGSINWSSVKSAGMSFAYIKATEGTNYKDDRFSANYTNAYNAGIIRGAYHFAR 143

Query: 234 PTVLYKKQLENIVRICSKVAAKPYAI---ALGVEVSAQGK----ISKAQYSDDIYSFLQL 392
           P         +         ++        L +E +  G     +S  Q    I  F   
Sbjct: 144 PNASSGTAQADYFASNGGGWSRDNRTLPGVLDIEHNPSGAMCYGLSTTQMRTWINDFHAR 203

Query: 393 LRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYS 572
            +++ +  + IYT+ S+WN           K   WV+H+     P +P  +  WT WQYS
Sbjct: 204 YKARTTRDVVIYTTASWWNTCTGSWNGMAAKSPFWVAHW-GVSAPTVPSGFPTWTFWQYS 262

Query: 573 GIGK 584
             G+
Sbjct: 263 ATGR 266
>sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX
          Length = 272

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 5/183 (2%)
 Frame = +3

Query: 51  NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 215
           +GIDVS    +IDW +V      G    F FIK+++G   VDP    NW  + +N    G
Sbjct: 68  HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127

Query: 216 VHHSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLL 395
            +H + P+V    Q    ++          A+   ++V  +GK+S  +    +  +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVDFSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMV 184

Query: 396 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 575
             +      IY+   F++ N+      F +Y  WV+HY  +R      +   W  WQ+S 
Sbjct: 185 EKRTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238

Query: 576 IGK 584
            G+
Sbjct: 239 RGQ 241
>sp|P76421|YEGX_ECOLI Hypothetical protein yegX
          Length = 272

 Score = 73.6 bits (179), Expect = 3e-13
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 5/183 (2%)
 Frame = +3

Query: 51  NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 215
           +GIDVS    +IDW +V      G    F FIK+++G   VDP    NW  + +N    G
Sbjct: 68  HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127

Query: 216 VHHSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLL 395
            +H + P+V    Q    ++          A+   ++V  +GK+S  +    +  +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVDFSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMV 184

Query: 396 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 575
                    IY+   F++ N+      F +Y  WV+HY  +R      +   W  WQ+S 
Sbjct: 185 EKSTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238

Query: 576 IGK 584
            G+
Sbjct: 239 RGQ 241
>sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX
          Length = 272

 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 5/183 (2%)
 Frame = +3

Query: 51  NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 215
           +GIDVS    +IDW +V      G    F FIK+++G   VDP    NW  + +N    G
Sbjct: 68  HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127

Query: 216 VHHSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLL 395
            +H + P+V    Q    ++          A+   ++V  +GK+S  +    +  +L+++
Sbjct: 128 AYHYFSPSVAAPVQARLFLQTVDFSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMV 184

Query: 396 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 575
                    IY+   F++ N+      F +Y  WV+HY  +R      +   W  WQ+S 
Sbjct: 185 EKSTGKKPVIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238

Query: 576 IGK 584
            G+
Sbjct: 239 RGQ 241
>sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin)
          Length = 324

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 46/176 (26%), Positives = 79/176 (44%)
 Frame = +3

Query: 54  GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYL 233
           GID+    G +D+  VK +G   V+IK+++G +Y D      ++ A     K+G +H YL
Sbjct: 3   GIDIYSGQGSVDFNAVKESGVEVVYIKATEGLTYTDSTYKDFYDGAKNAGLKIGFYH-YL 61

Query: 234 PTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSS 413
                  + E+     S ++      A+ VEV+    I   Q S ++  F   L +K   
Sbjct: 62  RANDPTSEAEHFFNTISGLSL-DCKCAIDVEVTLGQSID--QISSNVRKFADYLINK-GL 117

Query: 414 HIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIG 581
            + +YT  +F+ DN++    D     LW++ Y   +    P     +  +QYS  G
Sbjct: 118 DVCVYTYTNFYKDNLNSTVKDLP---LWIAEYGVSK----PNIDASYVGFQYSDSG 166
>sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH)
          Length = 211

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
 Frame = +3

Query: 54  GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALK---NQF-KVGVH 221
           G D+S +   +++A    AG  FV IK+++G SY +P   S +N A     N F + G H
Sbjct: 4   GFDISSYQPSVNFAGAYSAGARFVIIKATEGTSYTNPSFSSQYNGATTATGNYFIRGGYH 63

Query: 222 HSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGK------ISKAQYSDDIYSF 383
            ++        Q +  +      +     +   +++ ++G       +S A     I +F
Sbjct: 64  FAHPGETTGAAQADYFIAHGGGWSGDGITLPGMLDLESEGSNPACWGLSAASMVAWIKAF 123

Query: 384 LQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDF--TKYLLWVSHYTNKRQPYMPGNWTKWT 557
                +    +  +YT+ S+W+ +     + F  T  L+  + Y +     +PG W   T
Sbjct: 124 SDRYHAVTGRYPMLYTNPSWWS-SCTGNSNAFVNTNPLVLANRYASAPGT-IPGGWPYQT 181

Query: 558 MWQYS 572
           +WQ S
Sbjct: 182 IWQNS 186
>sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9 lysin)
          Length = 339

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 19/191 (9%)
 Frame = +3

Query: 57  IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLP 236
           IDVS HNG      ++  G +   +K S+  +Y++P L +     ++    +G +H    
Sbjct: 9   IDVSSHNGYDITGILEQMGTTNTIVKISESTTYLNPCLSAQ----VEQSTPIGFYH---- 60

Query: 237 TVLYKKQLENIVRICSKVA-AKPYAIALGVEVSAQGKISKAQYSDD-----------IYS 380
                       R    VA A+  A      V  Q K     Y DD              
Sbjct: 61  ----------FARFGGDVAEAEREAQFFLDNVPTQVKYLVLDYEDDPSGNAQANTNACLR 110

Query: 381 FLQLLRSKFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSHY----TNKRQPYMPG- 539
           F+Q++     + I+ Y+ K F  DN+D+++    F    LW++ Y     N    Y P  
Sbjct: 111 FMQMIADAGYTPIY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGNADFEYFPSM 168

Query: 540 NWTKWTMWQYS 572
           +  +W  WQYS
Sbjct: 169 DGIRW--WQYS 177
>sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1 lysin)
          Length = 339

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 19/191 (9%)
 Frame = +3

Query: 57  IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLP 236
           +DVS HNG      ++  G +   IK S+  +Y++P L +     ++    +G +H    
Sbjct: 9   VDVSSHNGYDITGILEQMGTTNTIIKISESTTYLNPCLSAQ----VEQSNPIGFYH---- 60

Query: 237 TVLYKKQLENIVRICSKVA-AKPYAIALGVEVSAQGKISKAQYSDD-----------IYS 380
                       R    VA A+  A      V  Q K     Y DD              
Sbjct: 61  ----------FARFGGDVAEAEREAQFFLDNVPMQVKYLVLDYEDDPSGDAQANTNACLR 110

Query: 381 FLQLLRSKFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSHY-----TNKRQPYMPG 539
           F+Q++       I+ Y+ K F +DN+D+++    F    LW++ Y     T   + +   
Sbjct: 111 FMQMIADAGYKPIY-YSYKPFTHDNVDYQQILAQFPN-SLWIAGYGLNDGTANFEYFPSM 168

Query: 540 NWTKWTMWQYS 572
           +  +W  WQYS
Sbjct: 169 DGIRW--WQYS 177
>sp|Q9TN87|MATK_RUSAC Maturase K (Intron maturase)
          Length = 520

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
 Frame = +3

Query: 75  NGKIDWAKVKGAGY----SFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLPTV 242
           NG I +  V+  GY    S V +K      Y    L+S  ND+ +N+F    H+++  + 
Sbjct: 38  NGSIFYEPVEVFGYDNKSSLVLVKRLITRIYQQNYLISLVNDSNQNRFVEYNHNNFFXSH 97

Query: 243 LYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFS 410
            + + +     I  ++   P+++ L V    + +I K      I+S    L  K S
Sbjct: 98  FHSQMISESFAIIVEI---PFSLRL-VSYFEEKEIPKYHNLRSIHSIFPFLEDKLS 149
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,637,930
Number of Sequences: 369166
Number of extensions: 1542113
Number of successful extensions: 4297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4283
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)