Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_C16
(584 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N... 82 1e-15
sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-ace... 76 5e-14
sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX 74 2e-13
sp|P76421|YEGX_ECOLI Hypothetical protein yegX 74 3e-13
sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX 73 5e-13
sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmu... 54 4e-07
sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH) 44 2e-04
sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9... 32 1.5
sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1... 30 3.4
sp|Q9TN87|MATK_RUSAC Maturase K (Intron maturase) 30 4.4
>sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N-acetylmuramidase)
(Autolysin)
Length = 342
Score = 81.6 bits (200), Expect = 1e-15
Identities = 50/176 (28%), Positives = 84/176 (47%)
Frame = +3
Query: 54 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYL 233
GIDVS+ G I++ VK G V+IK+++G + D N+ A KVG +H +
Sbjct: 11 GIDVSNWQGNINFKSVKNEGIEVVYIKATEGDYFKDSYAKQNYKRAKAEGLKVGFYHFFK 70
Query: 234 PTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSS 413
P K+Q + + +++ A Y L ++V S + + FL+ +R +
Sbjct: 71 PNKNAKRQAKYFIDYLNEIGATDYDCKLALDVETTEGRSAYELTTMCIEFLEEVRKITNR 130
Query: 414 HIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIG 581
+ +YT SF N+N+D + Y LW++ Y + P W+ W +QYS G
Sbjct: 131 EVVVYTYTSFANNNLD---NRLGVYPLWIAEY-GVKAPKDNRVWSSWIGFQYSDKG 182
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1)
Length = 294
Score = 76.3 bits (186), Expect = 5e-14
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 7/184 (3%)
Frame = +3
Query: 54 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYL 233
GIDVSH G I+W+ VK AG SF +IK+++G +Y D +N+ +A G +H
Sbjct: 84 GIDVSHWQGSINWSSVKSAGMSFAYIKATEGTNYKDDRFSANYTNAYNAGIIRGAYHFAR 143
Query: 234 PTVLYKKQLENIVRICSKVAAKPYAI---ALGVEVSAQGK----ISKAQYSDDIYSFLQL 392
P + ++ L +E + G +S Q I F
Sbjct: 144 PNASSGTAQADYFASNGGGWSRDNRTLPGVLDIEHNPSGAMCYGLSTTQMRTWINDFHAR 203
Query: 393 LRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYS 572
+++ + + IYT+ S+WN K WV+H+ P +P + WT WQYS
Sbjct: 204 YKARTTRDVVIYTTASWWNTCTGSWNGMAAKSPFWVAHW-GVSAPTVPSGFPTWTFWQYS 262
Query: 573 GIGK 584
G+
Sbjct: 263 ATGR 266
>sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX
Length = 272
Score = 74.3 bits (181), Expect = 2e-13
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 5/183 (2%)
Frame = +3
Query: 51 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 215
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 216 VHHSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLL 395
+H + P+V Q ++ A+ ++V +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVDFSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMV 184
Query: 396 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 575
+ IY+ F++ N+ F +Y WV+HY +R + W WQ+S
Sbjct: 185 EKRTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238
Query: 576 IGK 584
G+
Sbjct: 239 RGQ 241
>sp|P76421|YEGX_ECOLI Hypothetical protein yegX
Length = 272
Score = 73.6 bits (179), Expect = 3e-13
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 5/183 (2%)
Frame = +3
Query: 51 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 215
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 216 VHHSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLL 395
+H + P+V Q ++ A+ ++V +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVDFSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMV 184
Query: 396 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 575
IY+ F++ N+ F +Y WV+HY +R + W WQ+S
Sbjct: 185 EKSTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238
Query: 576 IGK 584
G+
Sbjct: 239 RGQ 241
>sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX
Length = 272
Score = 73.2 bits (178), Expect = 5e-13
Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 5/183 (2%)
Frame = +3
Query: 51 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 215
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 216 VHHSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLL 395
+H + P+V Q ++ A+ ++V +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVAAPVQARLFLQTVDFSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMV 184
Query: 396 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 575
IY+ F++ N+ F +Y WV+HY +R + W WQ+S
Sbjct: 185 EKSTGKKPVIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238
Query: 576 IGK 584
G+
Sbjct: 239 RGQ 241
>sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin)
Length = 324
Score = 53.5 bits (127), Expect = 4e-07
Identities = 46/176 (26%), Positives = 79/176 (44%)
Frame = +3
Query: 54 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYL 233
GID+ G +D+ VK +G V+IK+++G +Y D ++ A K+G +H YL
Sbjct: 3 GIDIYSGQGSVDFNAVKESGVEVVYIKATEGLTYTDSTYKDFYDGAKNAGLKIGFYH-YL 61
Query: 234 PTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSS 413
+ E+ S ++ A+ VEV+ I Q S ++ F L +K
Sbjct: 62 RANDPTSEAEHFFNTISGLSL-DCKCAIDVEVTLGQSID--QISSNVRKFADYLINK-GL 117
Query: 414 HIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIG 581
+ +YT +F+ DN++ D LW++ Y + P + +QYS G
Sbjct: 118 DVCVYTYTNFYKDNLNSTVKDLP---LWIAEYGVSK----PNIDASYVGFQYSDSG 166
>sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH)
Length = 211
Score = 44.3 bits (103), Expect = 2e-04
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Frame = +3
Query: 54 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALK---NQF-KVGVH 221
G D+S + +++A AG FV IK+++G SY +P S +N A N F + G H
Sbjct: 4 GFDISSYQPSVNFAGAYSAGARFVIIKATEGTSYTNPSFSSQYNGATTATGNYFIRGGYH 63
Query: 222 HSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGK------ISKAQYSDDIYSF 383
++ Q + + + + +++ ++G +S A I +F
Sbjct: 64 FAHPGETTGAAQADYFIAHGGGWSGDGITLPGMLDLESEGSNPACWGLSAASMVAWIKAF 123
Query: 384 LQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDF--TKYLLWVSHYTNKRQPYMPGNWTKWT 557
+ + +YT+ S+W+ + + F T L+ + Y + +PG W T
Sbjct: 124 SDRYHAVTGRYPMLYTNPSWWS-SCTGNSNAFVNTNPLVLANRYASAPGT-IPGGWPYQT 181
Query: 558 MWQYS 572
+WQ S
Sbjct: 182 IWQNS 186
>sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9 lysin)
Length = 339
Score = 31.6 bits (70), Expect = 1.5
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 19/191 (9%)
Frame = +3
Query: 57 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLP 236
IDVS HNG ++ G + +K S+ +Y++P L + ++ +G +H
Sbjct: 9 IDVSSHNGYDITGILEQMGTTNTIVKISESTTYLNPCLSAQ----VEQSTPIGFYH---- 60
Query: 237 TVLYKKQLENIVRICSKVA-AKPYAIALGVEVSAQGKISKAQYSDD-----------IYS 380
R VA A+ A V Q K Y DD
Sbjct: 61 ----------FARFGGDVAEAEREAQFFLDNVPTQVKYLVLDYEDDPSGNAQANTNACLR 110
Query: 381 FLQLLRSKFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSHY----TNKRQPYMPG- 539
F+Q++ + I+ Y+ K F DN+D+++ F LW++ Y N Y P
Sbjct: 111 FMQMIADAGYTPIY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGNADFEYFPSM 168
Query: 540 NWTKWTMWQYS 572
+ +W WQYS
Sbjct: 169 DGIRW--WQYS 177
>sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1 lysin)
Length = 339
Score = 30.4 bits (67), Expect = 3.4
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 19/191 (9%)
Frame = +3
Query: 57 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLP 236
+DVS HNG ++ G + IK S+ +Y++P L + ++ +G +H
Sbjct: 9 VDVSSHNGYDITGILEQMGTTNTIIKISESTTYLNPCLSAQ----VEQSNPIGFYH---- 60
Query: 237 TVLYKKQLENIVRICSKVA-AKPYAIALGVEVSAQGKISKAQYSDD-----------IYS 380
R VA A+ A V Q K Y DD
Sbjct: 61 ----------FARFGGDVAEAEREAQFFLDNVPMQVKYLVLDYEDDPSGDAQANTNACLR 110
Query: 381 FLQLLRSKFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSHY-----TNKRQPYMPG 539
F+Q++ I+ Y+ K F +DN+D+++ F LW++ Y T + +
Sbjct: 111 FMQMIADAGYKPIY-YSYKPFTHDNVDYQQILAQFPN-SLWIAGYGLNDGTANFEYFPSM 168
Query: 540 NWTKWTMWQYS 572
+ +W WQYS
Sbjct: 169 DGIRW--WQYS 177
>sp|Q9TN87|MATK_RUSAC Maturase K (Intron maturase)
Length = 520
Score = 30.0 bits (66), Expect = 4.4
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Frame = +3
Query: 75 NGKIDWAKVKGAGY----SFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLPTV 242
NG I + V+ GY S V +K Y L+S ND+ +N+F H+++ +
Sbjct: 38 NGSIFYEPVEVFGYDNKSSLVLVKRLITRIYQQNYLISLVNDSNQNRFVEYNHNNFFXSH 97
Query: 243 LYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFS 410
+ + + I ++ P+++ L V + +I K I+S L K S
Sbjct: 98 FHSQMISESFAIIVEI---PFSLRL-VSYFEEKEIPKYHNLRSIHSIFPFLEDKLS 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,637,930
Number of Sequences: 369166
Number of extensions: 1542113
Number of successful extensions: 4297
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4283
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)