Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_G03
(788 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N... 83 1e-15
sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-ace... 77 4e-14
sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX 74 5e-13
sp|P76421|YEGX_ECOLI Hypothetical protein yegX 73 8e-13
sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX 73 1e-12
sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmu... 54 6e-07
sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9... 38 0.036
sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1... 37 0.047
sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7... 37 0.062
sp|Q889X4|EFG_PSESM Elongation factor G (EF-G) 30 7.5
>sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N-acetylmuramidase)
(Autolysin)
Length = 342
Score = 82.8 bits (203), Expect = 1e-15
Identities = 52/191 (27%), Positives = 87/191 (45%)
Frame = +1
Query: 52 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYYL 231
GIDVS+ G I++ VK G V+IK+++G + D N+ A KVG YH++
Sbjct: 11 GIDVSNWQGNINFKSVKNEGIEVVYIKATEGDYFKDSYAKQNYKRAKAEGLKVGFYHFFK 70
Query: 232 PTVLYKTQFENIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRSKFSS 411
P K Q + + +++ A Y L ++ S + + FL+ +R +
Sbjct: 71 PNKNAKRQAKYFIDYLNEIGATDYDCKLALDVETTEGRSAYELTTMCIEFLEEVRKITNR 130
Query: 412 HIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYSXXXXXXX 591
+ +YT SF N+N+D + Y LW+++Y K P W+ W +QYS
Sbjct: 131 EVVVYTYTSFANNNLD---NRLGVYPLWIAEYGVKA-PKDNRVWSSWIGFQYSDKGNVAG 186
Query: 592 XXXXXDLNRLQ 624
D+N +
Sbjct: 187 VSGNCDMNEFK 197
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1)
Length = 294
Score = 77.4 bits (189), Expect = 4e-14
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 7/180 (3%)
Frame = +1
Query: 52 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYYL 231
GIDVSH G I+W+ VK AG SF +IK+++G +Y D +N+ +A G YH+
Sbjct: 84 GIDVSHWQGSINWSSVKSAGMSFAYIKATEGTNYKDDRFSANYTNAYNAGIIRGAYHFAR 143
Query: 232 PTVLYKTQFENIVRICSKVAAKPYAIALGVEDSAQGK-------ISKAQYSDDIYSFLQL 390
P T + ++ GV D +S Q I F
Sbjct: 144 PNASSGTAQADYFASNGGGWSRDNRTLPGVLDIEHNPSGAMCYGLSTTQMRTWINDFHAR 203
Query: 391 LRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 570
+++ + + IYT+ S+WN K WV+ + P +P + WT WQYS
Sbjct: 204 YKARTTRDVVIYTTASWWNTCTGSWNGMAAKSPFWVAHW-GVSAPTVPSGFPTWTFWQYS 262
>sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX
Length = 272
Score = 73.9 bits (180), Expect = 5e-13
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 5/179 (2%)
Frame = +1
Query: 49 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 213
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 214 VYHYYLPTVLYKTQFENIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLL 393
YHY+ P+V Q ++ + + L VE+ +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184
Query: 394 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 570
+ IY+ F++ N+ F +Y WV+ Y + +P G W WQ+S
Sbjct: 185 EKRTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQR-RPDNDG--MAWRFWQHS 237
>sp|P76421|YEGX_ECOLI Hypothetical protein yegX
Length = 272
Score = 73.2 bits (178), Expect = 8e-13
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Frame = +1
Query: 49 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 213
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 214 VYHYYLPTVLYKTQFENIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLL 393
YHY+ P+V Q ++ + + L VE+ +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184
Query: 394 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 570
IY+ F++ N+ F +Y WV+ Y + +P G W WQ+S
Sbjct: 185 EKSTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQR-RPDNDG--MAWRFWQHS 237
>sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX
Length = 272
Score = 72.8 bits (177), Expect = 1e-12
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 5/179 (2%)
Frame = +1
Query: 49 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 213
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 214 VYHYYLPTVLYKTQFENIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLL 393
YHY+ P+V Q ++ + + L VE+ +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVAAPVQARLFLQTVD-FSQGDFPAVLDVEE--RGKLSAKELRKRVSQWLKMV 184
Query: 394 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTKWTMWQYS 570
IY+ F++ N+ F +Y WV+ Y + +P G W WQ+S
Sbjct: 185 EKSTGKKPVIYSGAVFYHTNL---AGYFNEYPWWVAHYYQR-RPDNDG--MAWRFWQHS 237
>sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin)
Length = 324
Score = 53.5 bits (127), Expect = 6e-07
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 3/155 (1%)
Frame = +1
Query: 52 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYYL 231
GID+ G +D+ VK +G V+IK+++G +Y D ++ A K+G YHY
Sbjct: 3 GIDIYSGQGSVDFNAVKESGVEVVYIKATEGLTYTDSTYKDFYDGAKNAGLKIGFYHYLR 62
Query: 232 ---PTVLYKTQFENIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRSK 402
PT + F I + + A+ VE + I Q S ++ F L +K
Sbjct: 63 ANDPTSEAEHFFNTISGL-----SLDCKCAIDVEVTLGQSID--QISSNVRKFADYLINK 115
Query: 403 FSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDY 507
+ +YT +F+ DN++ D LW+++Y
Sbjct: 116 -GLDVCVYTYTNFYKDNLNSTVKDLP---LWIAEY 146
>sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9 lysin)
Length = 339
Score = 37.7 bits (86), Expect = 0.036
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 12/184 (6%)
Frame = +1
Query: 55 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYY-- 228
IDVS HNG ++ G + +K S+ +Y++P L + ++ +G YH+
Sbjct: 9 IDVSSHNGYDITGILEQMGTTNTIVKISESTTYLNPCLSAQ----VEQSTPIGFYHFARF 64
Query: 229 ---LPTVLYKTQFENIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRS 399
+ + QF V + + L ED G + ++ F+Q++
Sbjct: 65 GGDVAEAEREAQF-----FLDNVPTQVKYLVLDYEDDPSG--NAQANTNACLRFMQMIAD 117
Query: 400 KFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSDY----TNKGQPYMPG-NWTKWTM 558
+ I+ Y+ K F DN+D+++ F LW++ Y N Y P + +W
Sbjct: 118 AGYTPIY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGNADFEYFPSMDGIRW-- 173
Query: 559 WQYS 570
WQYS
Sbjct: 174 WQYS 177
>sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1 lysin)
Length = 339
Score = 37.4 bits (85), Expect = 0.047
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 12/184 (6%)
Frame = +1
Query: 55 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYY-- 228
+DVS HNG ++ G + IK S+ +Y++P L + ++ +G YH+
Sbjct: 9 VDVSSHNGYDITGILEQMGTTNTIIKISESTTYLNPCLSAQ----VEQSNPIGFYHFARF 64
Query: 229 ---LPTVLYKTQFENIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRS 399
+ + QF V + + L ED G ++ F+Q++
Sbjct: 65 GGDVAEAEREAQF-----FLDNVPMQVKYLVLDYEDDPSG--DAQANTNACLRFMQMIAD 117
Query: 400 KFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSDY-TNKGQ---PYMPG-NWTKWTM 558
I+ Y+ K F +DN+D+++ F LW++ Y N G Y P + +W
Sbjct: 118 AGYKPIY-YSYKPFTHDNVDYQQILAQFPN-SLWIAGYGLNDGTANFEYFPSMDGIRW-- 173
Query: 559 WQYS 570
WQYS
Sbjct: 174 WQYS 177
>sp|P19385|LYS_BPCP7 Lysozyme (Endolysin) (Muramidase) (CP-7 lysin)
Length = 342
Score = 37.0 bits (84), Expect = 0.062
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 7/179 (3%)
Frame = +1
Query: 55 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVYHYYLP 234
+DV+ H G ++ AG + IK S+ SY++P L + + +G YH+
Sbjct: 9 VDVASHQGYDISGILEEAGTTNTIIKVSESTSYLNPCLSAQ----VSQSNPIGFYHFACF 64
Query: 235 TVLYKTQFENIVRICSKVAAKPYAIALGVEDSAQGKISKAQYSDDIYSFLQLLRSKFSSH 414
+ V + + L ED A + + + F+Q++ +
Sbjct: 65 GGNEEEAEAEARYFLDNVPTQVKYLVLDYEDHASASVQR--NTTACLRFMQMIAEAGYTP 122
Query: 415 IFIYTSKSFWNDNIDWKR--HDFTKYLLWVSDY-TNKGQ---PYMPG-NWTKWTMWQYS 570
I+ Y+ K F DN+D+++ F LW++ Y N G Y P + +W WQYS
Sbjct: 123 IY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGTANFEYFPSMDGIRW--WQYS 177
>sp|Q889X4|EFG_PSESM Elongation factor G (EF-G)
Length = 701
Score = 30.0 bits (66), Expect = 7.5
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Frame = +1
Query: 142 GASYVDPMLVSNWNDALKNQFKVGVYHYYLPTVLYKTQFE----NIVRICSKVAAK---- 297
G S V+P + W A K Y +P ++Y + + N +R+ +++ +
Sbjct: 116 GTSGVEPQSETVWRQANK---------YGVPRIVYVNKMDRAGANFLRVIAQIKQRLGHT 166
Query: 298 --PYAIALGVEDSAQGKI 345
P +A+G ED+ QG+I
Sbjct: 167 PVPIQLAIGAEDNFQGQI 184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,213,302
Number of Sequences: 369166
Number of extensions: 1746354
Number of successful extensions: 4415
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4403
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)