Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_N14
(697 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N... 80 7e-15
sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX 75 2e-13
sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX 75 2e-13
sp|P76421|YEGX_ECOLI Hypothetical protein yegX 74 3e-13
sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-ace... 67 6e-11
sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmu... 55 2e-07
sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH) 39 0.010
sp|Q8WJ31|MATK_CHOSU Maturase K (Intron maturase) 31 2.7
sp|Q12618|ACO1_AJECA Acyl-CoA desaturase (Stearoyl-CoA desa... 26 8.3
>sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N-acetylmuramidase)
(Autolysin)
Length = 342
Score = 79.7 bits (195), Expect = 7e-15
Identities = 47/172 (27%), Positives = 81/172 (47%)
Frame = +3
Query: 18 GYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLPTVLYKKQLENIVRICSKV 197
G V+IK+++G + D N+ A KVG +H + P K+Q + + +++
Sbjct: 30 GIEVVYIKATEGDYFKDSYAKQNYKRAKAEGLKVGFYHFFKPNKNAKRQAKYFIDYLNEI 89
Query: 198 AAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDWKR 377
A Y L ++V S + + FL+ +R + + +YT SF N+N+D
Sbjct: 90 GATDYDCKLALDVETTEGRSAYELTTMCIEFLEEVRKITNREVVVYTYTSFANNNLD--- 146
Query: 378 HDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKVNGIKGNVDLNRLQ 533
+ Y LW++ Y + P W+ W +QYS G V G+ GN D+N +
Sbjct: 147 NRLGVYPLWIAEY-GVKAPKDNRVWSSWIGFQYSDKGNVAGVSGNCDMNEFK 197
>sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX
Length = 272
Score = 75.1 bits (183), Expect = 2e-13
Identities = 46/171 (26%), Positives = 79/171 (46%)
Frame = +3
Query: 12 GAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLPTVLYKKQLENIVRICS 191
G F FIK+++G VDP NW + +N G +H + P+V Q ++
Sbjct: 91 GIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVAAPVQARLFLQTVD 150
Query: 192 KVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDW 371
A+ ++V +GK+S + + +L+++ IY+ F++ N+
Sbjct: 151 FSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMVEKSTGKKPVIYSGAVFYHTNL-- 205
Query: 372 KRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKVNGIKGNVDLN 524
F +Y WV+HY +R + W WQ+S G+V+GI G+VD N
Sbjct: 206 -AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSDRGQVDGINGSVDFN 252
>sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX
Length = 272
Score = 75.1 bits (183), Expect = 2e-13
Identities = 46/171 (26%), Positives = 79/171 (46%)
Frame = +3
Query: 12 GAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLPTVLYKKQLENIVRICS 191
G F FIK+++G VDP NW + +N G +H + P+V Q ++
Sbjct: 91 GIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVSASVQARLFLQTVD 150
Query: 192 KVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDW 371
A+ ++V +GK+S + + +L+++ + IY+ F++ N+
Sbjct: 151 FSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMVEKRTGKKPIIYSGAVFYHTNL-- 205
Query: 372 KRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKVNGIKGNVDLN 524
F +Y WV+HY +R + W WQ+S G+V+GI G VD N
Sbjct: 206 -AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSDRGQVDGINGPVDFN 252
>sp|P76421|YEGX_ECOLI Hypothetical protein yegX
Length = 272
Score = 74.3 bits (181), Expect = 3e-13
Identities = 46/171 (26%), Positives = 78/171 (45%)
Frame = +3
Query: 12 GAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLPTVLYKKQLENIVRICS 191
G F FIK+++G VDP NW + +N G +H + P+V Q ++
Sbjct: 91 GIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVSASVQARLFLQTVD 150
Query: 192 KVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDW 371
A+ ++V +GK+S + + +L+++ IY+ F++ N+
Sbjct: 151 FSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMVEKSTGKKPIIYSGAVFYHTNL-- 205
Query: 372 KRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKVNGIKGNVDLN 524
F +Y WV+HY +R + W WQ+S G+V+GI G VD N
Sbjct: 206 -AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSDRGQVDGINGPVDFN 252
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1)
Length = 294
Score = 66.6 bits (161), Expect = 6e-11
Identities = 47/180 (26%), Positives = 77/180 (42%), Gaps = 7/180 (3%)
Frame = +3
Query: 9 EGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLPTVLYKKQLENIVRIC 188
+ AG SF +IK+++G +Y D +N+ +A G +H P +
Sbjct: 100 KSAGMSFAYIKATEGTNYKDDRFSANYTNAYNAGIIRGAYHFARPNASSGTAQADYFASN 159
Query: 189 SKVAAKPYAIALGV---EVSAQGK----ISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKS 347
++ GV E + G +S Q I F +++ + + IYT+ S
Sbjct: 160 GGGWSRDNRTLPGVLDIEHNPSGAMCYGLSTTQMRTWINDFHARYKARTTRDVVIYTTAS 219
Query: 348 FWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKVNGIKGNVDLNR 527
+WN K WV+H+ P +P + WT WQYS G+V G+ G+VD N+
Sbjct: 220 WWNTCTGSWNGMAAKSPFWVAHW-GVSAPTVPSGFPTWTFWQYSATGRVGGVSGDVDRNK 278
>sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin)
Length = 324
Score = 55.1 bits (131), Expect = 2e-07
Identities = 46/170 (27%), Positives = 78/170 (45%)
Frame = +3
Query: 15 AGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLPTVLYKKQLENIVRICSK 194
+G V+IK+++G +Y D ++ A K+G +H YL + E+ S
Sbjct: 21 SGVEVVYIKATEGLTYTDSTYKDFYDGAKNAGLKIGFYH-YLRANDPTSEAEHFFNTISG 79
Query: 195 VAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDWK 374
++ A+ VEV+ I Q S ++ F L +K + +YT +F+ DN++
Sbjct: 80 LSL-DCKCAIDVEVTLGQSID--QISSNVRKFADYLINK-GLDVCVYTYTNFYKDNLNST 135
Query: 375 RHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKVNGIKGNVDLN 524
D LW++ Y + P + +QYS G VNGI G+ DL+
Sbjct: 136 VKDLP---LWIAEYGVSK----PNIDASYVGFQYSDSGSVNGISGSADLD 178
>sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH)
Length = 211
Score = 39.3 bits (90), Expect = 0.010
Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 16/184 (8%)
Frame = +3
Query: 15 AGYSFVFIKSSQGASYVDPMLVSNWNDALK---NQF-KVGVHHSYLPTVLYKKQLENIVR 182
AG FV IK+++G SY +P S +N A N F + G H ++ Q + +
Sbjct: 22 AGARFVIIKATEGTSYTNPSFSSQYNGATTATGNYFIRGGYHFAHPGETTGAAQADYFIA 81
Query: 183 ICSKVAAKPYAIALGVEVSAQGK------ISKAQYSDDIYSFLQLLRSKFSSHIFIYTSK 344
+ + +++ ++G +S A I +F + + +YT+
Sbjct: 82 HGGGWSGDGITLPGMLDLESEGSNPACWGLSAASMVAWIKAFSDRYHAVTGRYPMLYTNP 141
Query: 345 SFWNDNIDWKRHDF--TKYLLWVSHYTNKRQPYMPGNWTKWTMWQ----YSGIGKVNGIK 506
S+W+ + + F T L+ + Y + +PG W T+WQ Y+ G N I
Sbjct: 142 SWWS-SCTGNSNAFVNTNPLVLANRYASAPGT-IPGGWPYQTIWQNSDAYAYGGSNNFIN 199
Query: 507 GNVD 518
G++D
Sbjct: 200 GSID 203
>sp|Q8WJ31|MATK_CHOSU Maturase K (Intron maturase)
Length = 503
Score = 31.2 bits (69), Expect = 2.7
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Frame = +3
Query: 9 EGAGY----SFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLPTVLYKKQLENI 176
E AGY S + +K Y L+ + ND+++NQF H+ L + + + I
Sbjct: 44 ENAGYGNKSSSIIVKRLITRMYQQNPLIFSANDSIQNQF--FGHNKNLYSQIISEGFAVI 101
Query: 177 VRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFS 317
V I P+++ L V + +I+K+Q I+S L KFS
Sbjct: 102 VEI-------PFSLRL-VSFLERKEIAKSQNLQSIHSIFPFLEDKFS 140
>sp|Q12618|ACO1_AJECA Acyl-CoA desaturase (Stearoyl-CoA desaturase) (Fatty acid
desaturase) (Delta(9)-desaturase)
Length = 476
Score = 26.2 bits (56), Expect(2) = 8.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 321 HIFIYTSKSFWNDNIDWKRHDFTKYLLWV 407
H F + S + + I+W ++D TK+ +W+
Sbjct: 275 HNFHHEFPSDYRNAIEWHQYDPTKWTIWI 303
Score = 21.9 bits (45), Expect(2) = 8.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +3
Query: 453 TKWTMWQYSGIGKVNGIK 506
TKWT+W + +G +K
Sbjct: 297 TKWTIWIWKQLGLAYDLK 314
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,882,881
Number of Sequences: 369166
Number of extensions: 1464879
Number of successful extensions: 3624
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3611
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)