Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_C24
(802 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N... 96 1e-19
sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-ace... 90 6e-18
sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX 89 1e-17
sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX 88 3e-17
sp|P76421|YEGX_ECOLI Hypothetical protein yegX 87 5e-17
sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmu... 68 3e-11
sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH) 48 3e-05
sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9... 32 2.6
sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1... 30 5.9
sp|Q9TN87|MATK_RUSAC Maturase K (Intron maturase) 30 5.9
>sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N-acetylmuramidase)
(Autolysin)
Length = 342
Score = 95.9 bits (237), Expect = 1e-19
Identities = 56/191 (29%), Positives = 93/191 (48%)
Frame = +3
Query: 66 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYL 245
GIDVS+ G I++ VK G V+IK+++G + D N+ A KVG +H +
Sbjct: 11 GIDVSNWQGNINFKSVKNEGIEVVYIKATEGDYFKDSYAKQNYKRAKAEGLKVGFYHFFK 70
Query: 246 PTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSS 425
P K+Q + + +++ A Y L ++V S + + FL+ +R +
Sbjct: 71 PNKNAKRQAKYFIDYLNEIGATDYDCKLALDVETTEGRSAYELTTMCIEFLEEVRKITNR 130
Query: 426 HIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKVNG 605
+ +YT SF N+N+D + Y LW++ Y + P W+ W +QYS G V G
Sbjct: 131 EVVVYTYTSFANNNLD---NRLGVYPLWIAEY-GVKAPKDNRVWSSWIGFQYSDKGNVAG 186
Query: 606 IKGNVDLNRLQ 638
+ GN D+N +
Sbjct: 187 VSGNCDMNEFK 197
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1)
Length = 294
Score = 90.1 bits (222), Expect = 6e-18
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 7/196 (3%)
Frame = +3
Query: 66 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYL 245
GIDVSH G I+W+ VK AG SF +IK+++G +Y D +N+ +A G +H
Sbjct: 84 GIDVSHWQGSINWSSVKSAGMSFAYIKATEGTNYKDDRFSANYTNAYNAGIIRGAYHFAR 143
Query: 246 PTVLYKKQLENIVRICSKVAAKPYAIALGV---EVSAQGK----ISKAQYSDDIYSFLQL 404
P + ++ GV E + G +S Q I F
Sbjct: 144 PNASSGTAQADYFASNGGGWSRDNRTLPGVLDIEHNPSGAMCYGLSTTQMRTWINDFHAR 203
Query: 405 LRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYS 584
+++ + + IYT+ S+WN K WV+H+ P +P + WT WQYS
Sbjct: 204 YKARTTRDVVIYTTASWWNTCTGSWNGMAAKSPFWVAHW-GVSAPTVPSGFPTWTFWQYS 262
Query: 585 GIGKVNGIKGNVDLNR 632
G+V G+ G+VD N+
Sbjct: 263 ATGRVGGVSGDVDRNK 278
>sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX
Length = 272
Score = 89.4 bits (220), Expect = 1e-17
Identities = 58/205 (28%), Positives = 95/205 (46%), Gaps = 9/205 (4%)
Frame = +3
Query: 42 FLFHVDAN----GIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNW 194
F H+ A+ GIDVS +IDW +V G F FIK+++G VDP NW
Sbjct: 57 FAIHIPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNW 116
Query: 195 NDALKNQFKVGVHHSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQY 374
+ +N G +H + P+V Q ++ A+ ++V +GK+S +
Sbjct: 117 QLSRENGLLRGAYHYFSPSVAAPVQARLFLQTVDFSQGDFPAV---LDVEERGKLSAKEL 173
Query: 375 SDDIYSFLQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGN 554
+ +L+++ IY+ F++ N+ F +Y WV+HY +R +
Sbjct: 174 RKRVSQWLKMVEKSTGKKPVIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DND 227
Query: 555 WTKWTMWQYSGIGKVNGIKGNVDLN 629
W WQ+S G+V+GI G+VD N
Sbjct: 228 GMAWRFWQHSDRGQVDGINGSVDFN 252
>sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX
Length = 272
Score = 87.8 bits (216), Expect = 3e-17
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 5/194 (2%)
Frame = +3
Query: 63 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 227
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 228 VHHSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLL 407
+H + P+V Q ++ A+ ++V +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVDFSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMV 184
Query: 408 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 587
+ IY+ F++ N+ F +Y WV+HY +R + W WQ+S
Sbjct: 185 EKRTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238
Query: 588 IGKVNGIKGNVDLN 629
G+V+GI G VD N
Sbjct: 239 RGQVDGINGPVDFN 252
>sp|P76421|YEGX_ECOLI Hypothetical protein yegX
Length = 272
Score = 87.0 bits (214), Expect = 5e-17
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 5/194 (2%)
Frame = +3
Query: 63 NGIDVSHHNGKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVG 227
+GIDVS +IDW +V G F FIK+++G VDP NW + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 228 VHHSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLL 407
+H + P+V Q ++ A+ ++V +GK+S + + +L+++
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVDFSQGDFPAV---LDVEERGKLSAKELRKRVSQWLKMV 184
Query: 408 RSKFSSHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSG 587
IY+ F++ N+ F +Y WV+HY +R + W WQ+S
Sbjct: 185 EKSTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRP---DNDGMAWRFWQHSD 238
Query: 588 IGKVNGIKGNVDLN 629
G+V+GI G VD N
Sbjct: 239 RGQVDGINGPVDFN 252
>sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin)
Length = 324
Score = 68.2 bits (165), Expect = 3e-11
Identities = 53/188 (28%), Positives = 88/188 (46%)
Frame = +3
Query: 66 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYL 245
GID+ G +D+ VK +G V+IK+++G +Y D ++ A K+G +H YL
Sbjct: 3 GIDIYSGQGSVDFNAVKESGVEVVYIKATEGLTYTDSTYKDFYDGAKNAGLKIGFYH-YL 61
Query: 246 PTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDDIYSFLQLLRSKFSS 425
+ E+ S ++ A+ VEV+ I Q S ++ F L +K
Sbjct: 62 RANDPTSEAEHFFNTISGLSL-DCKCAIDVEVTLGQSID--QISSNVRKFADYLINK-GL 117
Query: 426 HIFIYTSKSFWNDNIDWKRHDFTKYLLWVSHYTNKRQPYMPGNWTKWTMWQYSGIGKVNG 605
+ +YT +F+ DN++ D LW++ Y + P + +QYS G VNG
Sbjct: 118 DVCVYTYTNFYKDNLNSTVKDLP---LWIAEYGVSK----PNIDASYVGFQYSDSGSVNG 170
Query: 606 IKGNVDLN 629
I G+ DL+
Sbjct: 171 ISGSADLD 178
>sp|P00721|LYS_CHASP N,O-diacetylmuramidase (Lysozyme CH)
Length = 211
Score = 48.1 bits (113), Expect = 3e-05
Identities = 47/202 (23%), Positives = 87/202 (43%), Gaps = 16/202 (7%)
Frame = +3
Query: 66 GIDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALK---NQF-KVGVH 233
G D+S + +++A AG FV IK+++G SY +P S +N A N F + G H
Sbjct: 4 GFDISSYQPSVNFAGAYSAGARFVIIKATEGTSYTNPSFSSQYNGATTATGNYFIRGGYH 63
Query: 234 HSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGK------ISKAQYSDDIYSF 395
++ Q + + + + +++ ++G +S A I +F
Sbjct: 64 FAHPGETTGAAQADYFIAHGGGWSGDGITLPGMLDLESEGSNPACWGLSAASMVAWIKAF 123
Query: 396 LQLLRSKFSSHIFIYTSKSFWNDNIDWKRHDF--TKYLLWVSHYTNKRQPYMPGNWTKWT 569
+ + +YT+ S+W+ + + F T L+ + Y + +PG W T
Sbjct: 124 SDRYHAVTGRYPMLYTNPSWWS-SCTGNSNAFVNTNPLVLANRYASAPGT-IPGGWPYQT 181
Query: 570 MWQ----YSGIGKVNGIKGNVD 623
+WQ Y+ G N I G++D
Sbjct: 182 IWQNSDAYAYGGSNNFINGSID 203
>sp|P19386|LYS_BPCP9 Lysozyme (Endolysin) (Muramidase) (CP-9 lysin)
Length = 339
Score = 31.6 bits (70), Expect = 2.6
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 19/191 (9%)
Frame = +3
Query: 69 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLP 248
IDVS HNG ++ G + +K S+ +Y++P L + ++ +G +H
Sbjct: 9 IDVSSHNGYDITGILEQMGTTNTIVKISESTTYLNPCLSAQ----VEQSTPIGFYH---- 60
Query: 249 TVLYKKQLENIVRICSKVA-AKPYAIALGVEVSAQGKISKAQYSDD-----------IYS 392
R VA A+ A V Q K Y DD
Sbjct: 61 ----------FARFGGDVAEAEREAQFFLDNVPTQVKYLVLDYEDDPSGNAQANTNACLR 110
Query: 393 FLQLLRSKFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSHY----TNKRQPYMPG- 551
F+Q++ + I+ Y+ K F DN+D+++ F LW++ Y N Y P
Sbjct: 111 FMQMIADAGYTPIY-YSYKPFTLDNVDYQQILAQFPN-SLWIAGYGLNDGNADFEYFPSM 168
Query: 552 NWTKWTMWQYS 584
+ +W WQYS
Sbjct: 169 DGIRW--WQYS 177
>sp|P15057|LYS_BPCP1 Lysozyme (Endolysin) (Muramidase) (CP-1 lysin)
Length = 339
Score = 30.4 bits (67), Expect = 5.9
Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 19/191 (9%)
Frame = +3
Query: 69 IDVSHHNGKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSNWNDALKNQFKVGVHHSYLP 248
+DVS HNG ++ G + IK S+ +Y++P L + ++ +G +H
Sbjct: 9 VDVSSHNGYDITGILEQMGTTNTIIKISESTTYLNPCLSAQ----VEQSNPIGFYH---- 60
Query: 249 TVLYKKQLENIVRICSKVA-AKPYAIALGVEVSAQGKISKAQYSDD-----------IYS 392
R VA A+ A V Q K Y DD
Sbjct: 61 ----------FARFGGDVAEAEREAQFFLDNVPMQVKYLVLDYEDDPSGDAQANTNACLR 110
Query: 393 FLQLLRSKFSSHIFIYTSKSFWNDNIDWKR--HDFTKYLLWVSHY-----TNKRQPYMPG 551
F+Q++ I+ Y+ K F +DN+D+++ F LW++ Y T + +
Sbjct: 111 FMQMIADAGYKPIY-YSYKPFTHDNVDYQQILAQFPN-SLWIAGYGLNDGTANFEYFPSM 168
Query: 552 NWTKWTMWQYS 584
+ +W WQYS
Sbjct: 169 DGIRW--WQYS 177
>sp|Q9TN87|MATK_RUSAC Maturase K (Intron maturase)
Length = 520
Score = 30.4 bits (67), Expect = 5.9
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 5/133 (3%)
Frame = +3
Query: 39 PFLFHVDANGIDVSHH-NGKIDWAKVKGAGY----SFVFIKSSQGASYVDPMLVSNWNDA 203
P LF + +H NG I + V+ GY S V +K Y L+S ND+
Sbjct: 21 PLLFQEYIYALAHNHGVNGSIFYEPVEVFGYDNKSSLVLVKRLITRIYQQNYLISLVNDS 80
Query: 204 LKNQFKVGVHHSYLPTVLYKKQLENIVRICSKVAAKPYAIALGVEVSAQGKISKAQYSDD 383
+N+F H+++ + + + + I ++ P+++ L V + +I K
Sbjct: 81 NQNRFVEYNHNNFFXSHFHSQMISESFAIIVEI---PFSLRL-VSYFEEKEIPKYHNLRS 136
Query: 384 IYSFLQLLRSKFS 422
I+S L K S
Sbjct: 137 IHSIFPFLEDKLS 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,838,551
Number of Sequences: 369166
Number of extensions: 1770702
Number of successful extensions: 4414
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4395
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)