Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_M15
(660 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-ace... 61 2e-09
sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N... 59 9e-09
sp|P76421|YEGX_ECOLI Hypothetical protein yegX 54 3e-07
sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX 54 3e-07
sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX 54 4e-07
sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmu... 43 8e-04
sp|Q07954|LRP1_HUMAN Low-density lipoprotein receptor-relat... 32 1.9
sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-relat... 30 4.3
>sp|P25310|LYSM1_STRGL Lysozyme M1 precursor (1,4-beta-N-acetylmuramidase M1)
Length = 294
Score = 61.2 bits (147), Expect = 2e-09
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 7/180 (3%)
Frame = +1
Query: 46 GINVSHHNEKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSN*NDALKNQFKVGVYHYYL 225
GI+VSH I+W+ VK AG SF +IK+++G +Y D +N +A G YH+
Sbjct: 84 GIDVSHWQGSINWSSVKSAGMSFAYIKATEGTNYKDDRFSANYTNAYNAGIIRGAYHFAR 143
Query: 226 PTVLYKTQFDNIVRICSKGAAKPYAI---ALGVKNSAQGK----ISKAQYSNNIYXXXXX 384
P T + G ++ L ++++ G +S Q I
Sbjct: 144 PNASSGTAQADYFASNGGGWSRDNRTLPGVLDIEHNPSGAMCYGLSTTQMRTWINDFHAR 203
Query: 385 XXXXXXXHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTK*TMWQYS 564
+ IYT+ S+WN K WV+ + P +P + T WQYS
Sbjct: 204 YKARTTRDVVIYTTASWWNTCTGSWNGMAAKSPFWVAHW-GVSAPTVPSGFPTWTFWQYS 262
>sp|P26836|LYS_CLOPE Probable autolytic lysozyme (1,4-beta-N-acetylmuramidase)
(Autolysin)
Length = 342
Score = 59.3 bits (142), Expect = 9e-09
Identities = 47/194 (24%), Positives = 76/194 (39%)
Frame = +1
Query: 37 NANGINVSHHNEKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSN*NDALKNQFKVGVYH 216
N GI+VS+ I++ VK G V+IK+++G + D N A KVG YH
Sbjct: 8 NLKGIDVSNWQGNINFKSVKNEGIEVVYIKATEGDYFKDSYAKQNYKRAKAEGLKVGFYH 67
Query: 217 YYLPTVLYKTQFDNIVRICSKGAAKPYAIALGVKNSAQGKISKAQYSNNIYXXXXXXXXX 396
++ P K Q + ++ A Y L + S + +
Sbjct: 68 FFKPNKNAKRQAKYFIDYLNEIGATDYDCKLALDVETTEGRSAYELTTMCIEFLEEVRKI 127
Query: 397 XXXHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTK*TMWQYSXXXX 576
+ +YT SF N+N+D + Y LW+++Y K P W+ +QYS
Sbjct: 128 TNREVVVYTYTSFANNNLD---NRLGVYPLWIAEYGVKA-PKDNRVWSSWIGFQYSDKGN 183
Query: 577 XXXXXXXXDLNRLQ 618
D+N +
Sbjct: 184 VAGVSGNCDMNEFK 197
>sp|P76421|YEGX_ECOLI Hypothetical protein yegX
Length = 272
Score = 54.3 bits (129), Expect = 3e-07
Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 7/181 (3%)
Frame = +1
Query: 43 NGINVSHHNEKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSN*NDALKNQFKVG 207
+GI+VS E+IDW +V G F FIK+++G VDP N + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 208 VYHYYLPTVLYKTQFDNIVRIC--SKGAAKPYAIALGVKNSAQGKISKAQYSNNIYXXXX 381
YHY+ P+V Q ++ S+G + L V+ +GK+S + +
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVDFSQG---DFPAVLDVEE--RGKLSAKELRKRVSQWLK 182
Query: 382 XXXXXXXXHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTK*TMWQY 561
IY+ F++ N+ F +Y WV+ Y + W WQ+
Sbjct: 183 MVEKSTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRPDNDGMAW---RFWQH 236
Query: 562 S 564
S
Sbjct: 237 S 237
>sp|Q8FFY2|YEGX_ECOL6 Hypothetical protein yegX
Length = 272
Score = 54.3 bits (129), Expect = 3e-07
Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 7/181 (3%)
Frame = +1
Query: 43 NGINVSHHNEKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSN*NDALKNQFKVG 207
+GI+VS E+IDW +V G F FIK+++G VDP N + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 208 VYHYYLPTVLYKTQFDNIVRIC--SKGAAKPYAIALGVKNSAQGKISKAQYSNNIYXXXX 381
YHY+ P+V Q ++ S+G + L V+ +GK+S + +
Sbjct: 128 AYHYFSPSVSASVQARLFLQTVDFSQG---DFPAVLDVEE--RGKLSAKELRKRVSQWLK 182
Query: 382 XXXXXXXXHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTK*TMWQY 561
IY+ F++ N+ F +Y WV+ Y + W WQ+
Sbjct: 183 MVEKRTGKKPIIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRPDNDGMAW---RFWQH 236
Query: 562 S 564
S
Sbjct: 237 S 237
>sp|Q8X7H0|YEGX_ECO57 Hypothetical protein yegX
Length = 272
Score = 53.9 bits (128), Expect = 4e-07
Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 7/181 (3%)
Frame = +1
Query: 43 NGINVSHHNEKIDWAKV-----KGAGYSFVFIKSSQGASYVDPMLVSN*NDALKNQFKVG 207
+GI+VS E+IDW +V G F FIK+++G VDP N + +N G
Sbjct: 68 HGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKATEGEKLVDPYFSRNWQLSRENGLLRG 127
Query: 208 VYHYYLPTVLYKTQFDNIVRIC--SKGAAKPYAIALGVKNSAQGKISKAQYSNNIYXXXX 381
YHY+ P+V Q ++ S+G + L V+ +GK+S + +
Sbjct: 128 AYHYFSPSVAAPVQARLFLQTVDFSQG---DFPAVLDVEE--RGKLSAKELRKRVSQWLK 182
Query: 382 XXXXXXXXHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDYTNKGQPYMPGNWTK*TMWQY 561
IY+ F++ N+ F +Y WV+ Y + W WQ+
Sbjct: 183 MVEKSTGKKPVIYSGAVFYHTNL---AGYFNEYPWWVAHYYQRRPDNDGMAW---RFWQH 236
Query: 562 S 564
S
Sbjct: 237 S 237
>sp|P34020|LYS_CLOAB Autolytic lysozyme (1,4-beta-N-acetylmuramidase) (Autolysin)
Length = 324
Score = 42.7 bits (99), Expect = 8e-04
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 3/155 (1%)
Frame = +1
Query: 46 GINVSHHNEKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSN*NDALKNQFKVGVYHYYL 225
GI++ +D+ VK +G V+IK+++G +Y D + A K+G YHY
Sbjct: 3 GIDIYSGQGSVDFNAVKESGVEVVYIKATEGLTYTDSTYKDFYDGAKNAGLKIGFYHYLR 62
Query: 226 ---PTVLYKTQFDNIVRICSKGAAKPYAIALGVKNSAQGKISKAQYSNNIYXXXXXXXXX 396
PT + F+ I G + A+ V+ + I Q S+N+
Sbjct: 63 ANDPTSEAEHFFNTI-----SGLSLDCKCAIDVEVTLGQSID--QISSNV-RKFADYLIN 114
Query: 397 XXXHIFIYTSKSFWNDNIDWKRHDFTKYLLWVSDY 501
+ +YT +F+ DN++ D LW+++Y
Sbjct: 115 KGLDVCVYTYTNFYKDNLNSTVKDLP---LWIAEY 146
>sp|Q07954|LRP1_HUMAN Low-density lipoprotein receptor-related protein 1 precursor (LRP)
(Alpha-2-macroglobulin receptor) (A2MR) (Apolipoprotein E
receptor) (APOER) (CD91)
Length = 4544
Score = 31.6 bits (70), Expect = 1.9
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +1
Query: 46 GINVSHHNEKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSN*NDALKNQFKVGVYHYYL 225
G+ V +HNE++ WA K + + S + DP++ ++ L + F + V+ Y+
Sbjct: 4049 GLAVDYHNERLYWADAK------LSVIGSIRLNGTDPIVAADSKRGLSHPFSIDVFEDYI 4102
Query: 226 PTVLY 240
V Y
Sbjct: 4103 YGVTY 4107
>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 precursor (LRP)
(Alpha-2-macroglobulin receptor) (A2MR)
Length = 4543
Score = 30.4 bits (67), Expect = 4.3
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = +1
Query: 46 GINVSHHNEKIDWAKVKGAGYSFVFIKSSQGASYVDPMLVSN*NDALKNQFKVGVYHYYL 225
G+ V +HNE++ WA K + + S + DP++ + L + F + ++ Y+
Sbjct: 4048 GLAVDYHNERLYWADAK------LSVIGSIRLNGTDPVVAIDNKKGLSHPFSIDIFEDYI 4101
Query: 226 PTVLY 240
V Y
Sbjct: 4102 YGVTY 4106
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,026,785
Number of Sequences: 369166
Number of extensions: 1530433
Number of successful extensions: 3105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3098
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5511356910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)