Planarian EST Database

DrC_00306

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00306 GATTACTTATCTTTTTATTCTTCATCACAATGGTTGCCGCTAATGGTTATTATGGAAAAG CTGGTGTTCATCATGGAGTTGGTTTATATGGACATGCAGCTGGTCACGGTATGTACGGTG TGCATGGAGTGCAAGTTATACCTGTAATTCCAGCCGGTTATCCAATGGCACCCCATGCAA GCTATGGTCCCGGTTATGATAGCTATGGTGAAGTTTATTAGAGAAAATTAATATGTATTG ATAATTAGTAATAATAAATAAAACTTATTATTATTC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00306
         (276 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04929|HRPX_PLALO  Histidine-rich glycoprotein precursor        32   0.46 
sp|P46526|CS66_WHEAT  Cold shock protein CS66                      31   1.0  
sp|P17139|CO4A1_CAEEL  Collagen alpha 1(IV) chain precursor        31   1.0  
sp|O93484|CO1A2_ONCMY  Collagen alpha 2(I) chain precursor         31   1.0  
sp|Q99MR6|ARS2_MOUSE  Arsenite-resistance protein 2                30   1.3  
sp|Q9BXP5|ARS2_HUMAN  Arsenite-resistance protein 2                30   1.3  
sp|Q89AT4|NUON_BUCBP  NADH-quinone oxidoreductase chain N (N...    30   1.3  
sp|P39277|YJEH_ECOLI  Inner membrane protein yjeH                  30   1.7  
sp|Q07202|CORA_MEDSA  Cold and drought-regulated protein CORA      30   1.7  
sp|Q6F4C6|PMN14_PINFU  Prismalin-14 precursor                      30   1.7

>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
          Length = 351

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 210 HHSYHNRDHSLHGVPLDNRLELQV*LALHAHRTYRDQLHVHINQLHDEHQLFHNNH 43
           HH +H+  H  HG               H H  +    H H +  HD H   H++H
Sbjct: 231 HHGHHHHHHHHHGH--------------HHHHHHHHDAHHHHHHHHDAHHHHHHHH 272


 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/56 (25%), Positives = 21/56 (37%)
 Frame = -1

Query: 210 HHSYHNRDHSLHGVPLDNRLELQV*LALHAHRTYRDQLHVHINQLHDEHQLFHNNH 43
           HH +H+  H  H     +          H H  +    H H +  HD H   H++H
Sbjct: 241 HHGHHHHHHHHHDAHHHHHHHHDA----HHHHHHHHDAHHHHHHHHDAHHHHHHHH 292


 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 210 HHSYHNRDHSLHGVPLDNRLELQV*LALHAHRTYRDQLHVHINQLHDEHQLFHNNH 43
           HH +H+  H  H    D           H H  +    H H +  HD H   H++H
Sbjct: 247 HHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 302


 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = -1

Query: 210 HHSYHNRDHSLHGVPLDNRLELQV*LALHAHRTYRDQLHVHINQLHDEHQLFHNNH 43
           HH +H+ D   H    D           H H  +    H H +  HD H   H++H
Sbjct: 296 HHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 351

>sp|P46526|CS66_WHEAT Cold shock protein CS66
          Length = 469

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 33  VAANGYYGKAGVHHGVGLYGHAAGHGMYGVHG 128
           +A  G YG+ G H G  ++G  A +G YG HG
Sbjct: 113 LATGGTYGQQG-HTGTAMHGTPATNGTYGEHG 143

>sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor
          Length = 1759

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 45   GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPA-----GYPMAPHASYGPGY 197
            GY G+ G+    G  GH    G  GV GV+ +P +       GYP AP A    GY
Sbjct: 1322 GYPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGY 1377

>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
          Length = 1356

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
 Frame = +3

Query: 45   GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIP--VIPAGYP-----MAPHASYGPGYDS 203
            G  G AG H   G  G A GHG  G  G +  P  + PAG P       P    G GYD 
Sbjct: 1045 GPRGPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGHLGPAGPPGSPGLPGPAGPAGGGYDQ 1104

Query: 204  YG 209
             G
Sbjct: 1105 SG 1106

>sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2
          Length = 875

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 114 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 206
           YG   V+  P +P G P  PHA YG G  +Y
Sbjct: 807 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 835

>sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2
          Length = 876

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 114 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 206
           YG   V+  P +P G P  PHA YG G  +Y
Sbjct: 808 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 836

>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
           (NDH-1, chain N)
          Length = 494

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 227 FSLINFTIAIITGTIACMGCHWITGWNYRYNLHSMH--TVHTVTSCMSI*TNSMMNTSF 57
           +SL+   I II+  +AC+  H+ +  NY YN    +   +     C+SI  ++ + T F
Sbjct: 72  YSLLYIGIVIISSFLACIFSHYCSLTNYLYNFEEFYLLLLFCTIGCVSIIISNNLCTFF 130

>sp|P39277|YJEH_ECOLI Inner membrane protein yjeH
          Length = 418

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 3   LLIFLFFITMVAA---NGYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAP 173
           L+I +F I +V A     Y    GV H VG+   A G  +  V G   + VIP G P A 
Sbjct: 48  LIILVFPIAIVFAILGRHYPSAGGVAHFVGM---AFGSRLERVTGWLFLSVIPVGLPAAL 104

Query: 174 HASYGPGYDSYG 209
             + G G   +G
Sbjct: 105 QIAAGFGQAMFG 116

>sp|Q07202|CORA_MEDSA Cold and drought-regulated protein CORA
          Length = 204

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 54  GKAGVHHGVGLYGH-AAGHGMYGVHG 128
           G+ G +HG G Y H   GHG +G HG
Sbjct: 160 GRGGYNHGGGGYNHGGGGHGGHGGHG 185


 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 45  GY-YGKAGVHHGVGLYGHAAGHGMYGVHG 128
           GY +G  G +HG G +G   GHG +G HG
Sbjct: 163 GYNHGGGGYNHGGGGHGGHGGHGGHGGHG 191

>sp|Q6F4C6|PMN14_PINFU Prismalin-14 precursor
          Length = 121

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 20/55 (36%), Positives = 23/55 (41%)
 Frame = +3

Query: 45  GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYG 209
           GY G  G + G+GLYG   G G YG            GY    +  YG G D  G
Sbjct: 70  GYGGFNGGYGGLGLYGGYGGFGGYGYRPFSY------GYNPFSYGYYGFGDDDGG 118

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,550,699
Number of Sequences: 369166
Number of extensions: 609446
Number of successful extensions: 2184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2153
length of database: 68,354,980
effective HSP length: 61
effective length of database: 57,086,145
effective search space used: 1712584350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00306

Planaria EST Database

DrC_00306

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail