Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N22
(226 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2 30 1.3
sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2 30 1.3
sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (N... 30 1.3
sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor 30 1.3
sp|Q07202|CORA_MEDSA Cold and drought-regulated protein CORA 30 1.7
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 28 4.9
sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor 28 4.9
sp|P43512|CHA2_LYMDI Chorion class A proteins Ld2/Ld41 prec... 28 4.9
sp|P46525|CS120_WHEAT Cold-shock protein CS120 28 6.4
sp|Q03692|COAA1_HUMAN Collagen alpha 1(X) chain precursor 28 8.4
>sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2
Length = 875
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 68 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 160
YG V+ P +P G P PHA YG G +Y
Sbjct: 807 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 835
>sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2
Length = 876
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 68 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 160
YG V+ P +P G P PHA YG G +Y
Sbjct: 808 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 836
>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
(NDH-1, chain N)
Length = 494
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 181 FSLINFTIAIITGTIACMGCHWITGWNYRYNLNSMH--TVHTVTSCMSI*TNSMMNTSF 11
+SL+ I II+ +AC+ H+ + NY YN + + C+SI ++ + T F
Sbjct: 72 YSLLYIGIVIISSFLACIFSHYCSLTNYLYNFEEFYLLLLFCTIGCVSIIISNNLCTFF 130
>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
Length = 1356
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Frame = +2
Query: 8 GKAGVHHGVGLYGHAAGHGMYGVHGVQVIP--VIPAGYP-----MAPHASYGPGYDSYG 163
G AG H G G A GHG G G + P + PAG P P G GYD G
Sbjct: 1048 GPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGHLGPAGPPGSPGLPGPAGPAGGGYDQSG 1106
>sp|Q07202|CORA_MEDSA Cold and drought-regulated protein CORA
Length = 204
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 8 GKAGVHHGVGLYGH-AAGHGMYGVHG 82
G+ G +HG G Y H GHG +G HG
Sbjct: 160 GRGGYNHGGGGYNHGGGGHGGHGGHG 185
Score = 29.6 bits (65), Expect = 2.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 5 YGKAGVHHGVGLYGHAAGHGMYGVHG 82
+G G +HG G +G GHG +G HG
Sbjct: 166 HGGGGYNHGGGGHGGHGGHGGHGGHG 191
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 28.5 bits (62), Expect = 4.9
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = -3
Query: 164 HHSYHNRDHSLHGVPLDNRLELQV*LELHAHRTYRDQLHVHINQLHDEHQLFHN 3
HH +H+ H HG + + H H + H H + HD H H+
Sbjct: 231 HHGHHHHHHHHHGHHHHHHHHH----DAHHHHHHHHDAHHHHHHHHDAHHHHHH 280
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = -3
Query: 164 HHSYHNRDHSLHGVPLDNRLELQV*LELHAHRTYRDQLHVHINQLHDEHQLFHN 3
HH +H+ H H D + H H + H H + HD H H+
Sbjct: 237 HHHHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHH 290
>sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor
Length = 1759
Score = 28.5 bits (62), Expect = 4.9
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +2
Query: 2 YYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPA-----GYPMAPHASYGPGY 151
Y G+ G+ G GH G GV GV+ +P + GYP AP A GY
Sbjct: 1323 YPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGY 1377
Score = 28.1 bits (61), Expect = 6.4
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +2
Query: 8 GKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYG 163
G G+H G+ G G G+ G P + GYP AP A PG +G
Sbjct: 776 GFPGLHGEPGMRGQQGEVGFNGIDGDCGEPGLD-GYPGAPGAPGAPGETGFG 826
>sp|P43512|CHA2_LYMDI Chorion class A proteins Ld2/Ld41 precursor
Length = 140
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 32 VGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYGEV 169
+G YG A +G+ +G++ A Y A +A YG G D+YG +
Sbjct: 36 IGGYGLGAPYGLGCGYGLE------APYGWAGYADYGYGLDAYGGI 75
>sp|P46525|CS120_WHEAT Cold-shock protein CS120
Length = 391
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 5 YGKAGVHHGVGLYGHAAGHGMYGVHG 82
YG+ G H G +G AG G YG HG
Sbjct: 311 YGQQG-HTGTATHGTPAGGGTYGQHG 335
>sp|Q03692|COAA1_HUMAN Collagen alpha 1(X) chain precursor
Length = 680
Score = 27.7 bits (60), Expect = 8.4
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Frame = +2
Query: 8 GKAGVHHGVGLYGHAAGHGMYGVHGV-----QVIPVIPAGYPMAPHASYGPGYD 154
GK G+ G G G+ G HG+ + P PAGYP A PG D
Sbjct: 332 GKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD 385
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,814,673
Number of Sequences: 369166
Number of extensions: 500183
Number of successful extensions: 1771
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)