Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_I17
(229 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2 30 1.3
sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2 30 1.3
sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (N... 29 2.9
sp|P95071|RL15_MYCTU 50S ribosomal protein L15 28 4.9
sp|P43512|CHA2_LYMDI Chorion class A proteins Ld2/Ld41 prec... 28 4.9
>sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2
Length = 875
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 67 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 159
YG V+ P +P G P PHA YG G +Y
Sbjct: 807 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 835
>sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2
Length = 876
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 67 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 159
YG V+ P +P G P PHA YG G +Y
Sbjct: 808 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 836
>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
(NDH-1, chain N)
Length = 494
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 180 FSLINFTIAIITGTIACMGCHWITGWNYRYNLHSMH--TVHTVTSCMSI 40
+SL+ I II+ +AC+ H+ + NY YN + + C+SI
Sbjct: 72 YSLLYIGIVIISSFLACIFSHYCSLTNYLYNFEEFYLLLLFCTIGCVSI 120
>sp|P95071|RL15_MYCTU 50S ribosomal protein L15
Length = 146
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 7 SRTRVHHGVGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPH 129
+RTRV G G G AG G G + +PV G M H
Sbjct: 17 ARTRVGRGDGSKGKTAGRGTKGTRARKQVPVTFEGGQMPIH 57
>sp|P43512|CHA2_LYMDI Chorion class A proteins Ld2/Ld41 precursor
Length = 140
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 31 VGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYGEV 168
+G YG A +G+ +G++ A Y A +A YG G D+YG +
Sbjct: 36 IGGYGLGAPYGLGCGYGLE------APYGWAGYADYGYGLDAYGGI 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,191,854
Number of Sequences: 369166
Number of extensions: 564239
Number of successful extensions: 1840
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1835
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1670828180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)