Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_M15
(211 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2 30 1.3
sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2 30 1.3
sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (N... 29 2.9
sp|P43512|CHA2_LYMDI Chorion class A proteins Ld2/Ld41 prec... 28 5.0
sp|Q28143|NRX3B_BOVIN Neurexin-3-beta precursor (Neurexin I... 28 8.6
sp|O13356|CHS1_CRYNV Chitin synthase 1 (Chitin-UDP acetyl-g... 28 8.6
sp|Q9HDB5|NRX3B_HUMAN Neurexin-3-beta precursor (Neurexin I... 28 8.6
>sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2
Length = 875
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 49 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 141
YG V+ P +P G P PHA YG G +Y
Sbjct: 807 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 835
>sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2
Length = 876
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 49 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 141
YG V+ P +P G P PHA YG G +Y
Sbjct: 808 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 836
>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
(NDH-1, chain N)
Length = 494
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = -2
Query: 162 FSLINFTIAIITGTIACMGCHWITGWNYRYNLNSMH--TVHTVTSCMSI 22
+SL+ I II+ +AC+ H+ + NY YN + + C+SI
Sbjct: 72 YSLLYIGIVIISSFLACIFSHYCSLTNYLYNFEEFYLLLLFCTIGCVSI 120
>sp|P43512|CHA2_LYMDI Chorion class A proteins Ld2/Ld41 precursor
Length = 140
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 13 VGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYGEV 150
+G YG A +G+ +G++ A Y A +A YG G D+YG +
Sbjct: 36 IGGYGLGAPYGLGCGYGLE------APYGWAGYADYGYGLDAYGGI 75
>sp|Q28143|NRX3B_BOVIN Neurexin-3-beta precursor (Neurexin III-beta)
Length = 456
Score = 27.7 bits (60), Expect = 8.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 6 SWSWFIWTCSWSRYVRCAWSSSYTCNSS 89
+W+ IW+ W V WSSS +SS
Sbjct: 16 AWTLGIWSLFWGCIVSSVWSSSNVASSS 43
>sp|O13356|CHS1_CRYNV Chitin synthase 1 (Chitin-UDP acetyl-glucosaminyl transferase 1)
(Class-IV chitin synthase 1)
Length = 1041
Score = 27.7 bits (60), Expect = 8.6
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +3
Query: 21 IWTCSWSRYVRC----AWSSSYTCNSSRLSNGTPCKLWS 125
++T S S Y C A+SS CNS+ S+GT C L S
Sbjct: 189 LFTRSVSDYPACTSSLAYSSGAFCNSTSSSSGTSCVLSS 227
>sp|Q9HDB5|NRX3B_HUMAN Neurexin-3-beta precursor (Neurexin III-beta)
Length = 536
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 6 SWSWFIWTCSWSRYVRCAWSSSYTCNSSRLSN 101
+W+ IW W V WSSS +SS S+
Sbjct: 16 AWTLGIWFLFWGCIVSSVWSSSNVASSSSTSS 47
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,902,450
Number of Sequences: 369166
Number of extensions: 493846
Number of successful extensions: 1663
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1660
length of database: 68,354,980
effective HSP length: 41
effective length of database: 60,780,845
effective search space used: 1701863660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)