Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E07
(217 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2 30 1.3
sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2 30 1.3
sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (N... 30 1.3
sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor 28 5.0
sp|P43512|CHA2_LYMDI Chorion class A proteins Ld2/Ld41 prec... 28 5.0
>sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2
Length = 875
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 59 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 151
YG V+ P +P G P PHA YG G +Y
Sbjct: 807 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 835
>sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2
Length = 876
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 59 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 151
YG V+ P +P G P PHA YG G +Y
Sbjct: 808 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 836
>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
(NDH-1, chain N)
Length = 494
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 172 FSLINFTIAIITGTIACMGCHWITGWNYRYNLHSMH--TVHTVTSCMSI*TNSMMNTSF 2
+SL+ I II+ +AC+ H+ + NY YN + + C+SI ++ + T F
Sbjct: 72 YSLLYIGIVIISSFLACIFSHYCSLTNYLYNFEEFYLLLLFCTIGCVSIIISNNLCTFF 130
>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
Length = 1356
Score = 28.5 bits (62), Expect = 5.0
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Frame = +2
Query: 5 AGVHHGVGLYGHAAGHGMYGVHGVQVIP--VIPAGYP-----MAPHASYGPGYDSYG 154
AG H G G A GHG G G + P + PAG P P G GYD G
Sbjct: 1050 AGPHGPPGKDGRAGGHGAIGPVGHRGSPGHLGPAGPPGSPGLPGPAGPAGGGYDQSG 1106
>sp|P43512|CHA2_LYMDI Chorion class A proteins Ld2/Ld41 precursor
Length = 140
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 23 VGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYGEV 160
+G YG A +G+ +G++ A Y A +A YG G D+YG +
Sbjct: 36 IGGYGLGAPYGLGCGYGLE------APYGWAGYADYGYGLDAYGGI 75
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,874,649
Number of Sequences: 369166
Number of extensions: 535894
Number of successful extensions: 1836
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1827
length of database: 68,354,980
effective HSP length: 43
effective length of database: 60,411,375
effective search space used: 1691518500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)