Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_O18
(232 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor 31 1.0
sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor 31 1.0
sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2 30 1.3
sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2 30 1.3
sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (N... 30 1.3
sp|Q07202|CORA_MEDSA Cold and drought-regulated protein CORA 30 1.8
sp|Q6F4C6|PMN14_PINFU Prismalin-14 precursor 30 1.8
sp|P46525|CS120_WHEAT Cold-shock protein CS120 30 2.3
sp|P82118|CUO5_BLACR Cuticle protein 5 (BcNCP14.6) 29 3.0
sp|P46526|CS66_WHEAT Cold shock protein CS66 29 3.9
>sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor
Length = 1759
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 1 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPA-----GYPMAPHASYGPGY 153
GY G+ G+ G GH G GV GV+ +P + GYP AP A GY
Sbjct: 1322 GYPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGY 1377
Score = 28.9 bits (63), Expect = 3.9
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 1 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYG 165
G G G+H G+ G G G+ G P + GYP AP A PG +G
Sbjct: 773 GLPGFPGLHGEPGMRGQQGEVGFNGIDGDCGEPGLD-GYPGAPGAPGAPGETGFG 826
>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
Length = 1356
Score = 30.8 bits (68), Expect = 1.0
Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = +1
Query: 1 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIP--VIPAGYP-----MAPHASYGPGYDS 159
G G AG H G G A GHG G G + P + PAG P P G GYD
Sbjct: 1045 GPRGPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGHLGPAGPPGSPGLPGPAGPAGGGYDQ 1104
Query: 160 YG 165
G
Sbjct: 1105 SG 1106
>sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2
Length = 875
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 70 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 162
YG V+ P +P G P PHA YG G +Y
Sbjct: 807 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 835
>sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2
Length = 876
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 70 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 162
YG V+ P +P G P PHA YG G +Y
Sbjct: 808 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 836
>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
(NDH-1, chain N)
Length = 494
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 183 FSLINFTIAIITGTIACMGCHWITGWNYRYNLHSMH--TVHTVTSCMSI*TNSMMNTSF 13
+SL+ I II+ +AC+ H+ + NY YN + + C+SI ++ + T F
Sbjct: 72 YSLLYIGIVIISSFLACIFSHYCSLTNYLYNFEEFYLLLLFCTIGCVSIIISNNLCTFF 130
>sp|Q07202|CORA_MEDSA Cold and drought-regulated protein CORA
Length = 204
Score = 30.0 bits (66), Expect = 1.8
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 10 GKAGVHHGVGLYGH-AAGHGMYGVHG 84
G+ G +HG G Y H GHG +G HG
Sbjct: 160 GRGGYNHGGGGYNHGGGGHGGHGGHG 185
Score = 30.0 bits (66), Expect = 1.8
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 1 GY-YGKAGVHHGVGLYGHAAGHGMYGVHG 84
GY +G G +HG G +G GHG +G HG
Sbjct: 163 GYNHGGGGYNHGGGGHGGHGGHGGHGGHG 191
>sp|Q6F4C6|PMN14_PINFU Prismalin-14 precursor
Length = 121
Score = 30.0 bits (66), Expect = 1.8
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +1
Query: 1 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYG 165
GY G G + G+GLYG G G YG GY + YG G D G
Sbjct: 70 GYGGFNGGYGGLGLYGGYGGFGGYGYRPFSY------GYNPFSYGYYGFGDDDGG 118
>sp|P46525|CS120_WHEAT Cold-shock protein CS120
Length = 391
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 1 GYYGKAGVHHGVGLYGHAAGHGMYGVHG 84
G YG+ G H G +G AG G YG HG
Sbjct: 309 GAYGQQG-HTGTATHGTPAGGGTYGQHG 335
>sp|P82118|CUO5_BLACR Cuticle protein 5 (BcNCP14.6)
Length = 145
Score = 29.3 bits (64), Expect = 3.0
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 1 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPAGYP 120
G YG G +HG G GH AG + +PVI G P
Sbjct: 90 GLYGDEGQYHGEGYAGHYAG-------PIAGVPVIVNGVP 122
>sp|P46526|CS66_WHEAT Cold shock protein CS66
Length = 469
Score = 28.9 bits (63), Expect = 3.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 1 GYYGKAGVHHGVGLYGHAAGHGMYGVHG 84
G YG+ G H G ++G A +G YG HG
Sbjct: 117 GTYGQQG-HTGTAMHGTPATNGTYGEHG 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,945,718
Number of Sequences: 369166
Number of extensions: 511710
Number of successful extensions: 1811
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1800
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1730500615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)