Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_D14
(269 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 32 0.46
sp|P46526|CS66_WHEAT Cold shock protein CS66 31 1.0
sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor 31 1.0
sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor 31 1.0
sp|Q05738|SRY_MOUSE Sex-determining region Y protein (Testi... 30 1.3
sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2 30 1.3
sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2 30 1.3
sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (N... 30 1.3
sp|Q07202|CORA_MEDSA Cold and drought-regulated protein CORA 30 1.7
sp|Q6F4C6|PMN14_PINFU Prismalin-14 precursor 30 1.7
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 32.0 bits (71), Expect = 0.46
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -3
Query: 207 HHSYHNRDHSLHGVPLDNRLELQV*LELHAHRTYRDQLHVHINQLHDEHQLFHNNH 40
HH +H+ H HG + + H H + H H + HD H H++H
Sbjct: 231 HHGHHHHHHHHHGHHHHHHHHH----DAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 282
Score = 31.2 bits (69), Expect = 0.78
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = -3
Query: 207 HHSYHNRDHSLHGVPLDNRLELQV*LELHAHRTYRDQLHVHINQLHDEHQLFHNNH 40
HH +H+ H H D + H H + H H + HD H H++H
Sbjct: 237 HHHHHHGHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 292
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = -3
Query: 207 HHSYHNRDHSLHGVPLDNRLELQV*LELHAHRTYRDQLHVHINQLHDEHQLFHNNH 40
HH +H+ H H D + H H + H H + HD H H++H
Sbjct: 247 HHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 302
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/56 (26%), Positives = 22/56 (39%)
Frame = -3
Query: 207 HHSYHNRDHSLHGVPLDNRLELQV*LELHAHRTYRDQLHVHINQLHDEHQLFHNNH 40
HH +H+ D H D + H H + H H + HD H H++H
Sbjct: 296 HHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 351
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/56 (25%), Positives = 21/56 (37%)
Frame = -3
Query: 207 HHSYHNRDHSLHGVPLDNRLELQV*LELHAHRTYRDQLHVHINQLHDEHQLFHNNH 40
HH H+ H H + + H H + H H + HD H H++H
Sbjct: 291 HHDAHHHHHHHHDAHHHHHHH-----DAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 341
Score = 27.7 bits (60), Expect = 8.7
Identities = 14/55 (25%), Positives = 21/55 (38%)
Frame = -3
Query: 207 HHSYHNRDHSLHGVPLDNRLELQV*LELHAHRTYRDQLHVHINQLHDEHQLFHNN 43
HH +H+ H H D + H H + H H + HD H H++
Sbjct: 257 HHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHH 311
>sp|P46526|CS66_WHEAT Cold shock protein CS66
Length = 469
Score = 30.8 bits (68), Expect = 1.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 30 VAANGYYGKAGVHHGVGLYGHAAGHGMYGVHG 125
+A G YG+ G H G ++G A +G YG HG
Sbjct: 113 LATGGTYGQQG-HTGTAMHGTPATNGTYGEHG 143
>sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor
Length = 1759
Score = 30.8 bits (68), Expect = 1.0
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +3
Query: 42 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPA-----GYPMAPHASYGPGY 194
GY G+ G+ G GH G GV GV+ +P + GYP AP A GY
Sbjct: 1322 GYPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGY 1377
>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
Length = 1356
Score = 30.8 bits (68), Expect = 1.0
Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = +3
Query: 42 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIP--VIPAGYP-----MAPHASYGPGYDS 200
G G AG H G G A GHG G G + P + PAG P P G GYD
Sbjct: 1045 GPRGPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGHLGPAGPPGSPGLPGPAGPAGGGYDQ 1104
Query: 201 YG 206
G
Sbjct: 1105 SG 1106
>sp|Q05738|SRY_MOUSE Sex-determining region Y protein (Testis-determining factor)
Length = 395
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Frame = -3
Query: 204 HSYHNRDHSLHGVPLDNRLELQV*LELHAHRTYRDQLHVH---INQLHDEH-----QLFH 49
H++H + + + + Q + H H + Q H H Q HD H Q FH
Sbjct: 156 HNHHQQQQQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHDHHQQQQQFHDHHHHHQEQQFH 215
Query: 48 NNH*RQ 31
++H +Q
Sbjct: 216 DHHQQQ 221
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Frame = -3
Query: 204 HSYHNRDHSLHGVPLDNRLELQV*LELHAHRTYRDQLHVHIN------QLHDEH---QLF 52
H + + H H P + + H H + Q H H + Q HD H Q F
Sbjct: 272 HDHQQQQHQFHDHPQQKQ-------QFHDHPQQQQQFHDHHHQQQQKQQFHDHHQQKQQF 324
Query: 51 HNNH 40
H++H
Sbjct: 325 HDHH 328
>sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2
Length = 875
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 111 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 203
YG V+ P +P G P PHA YG G +Y
Sbjct: 807 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 835
>sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2
Length = 876
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 111 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 203
YG V+ P +P G P PHA YG G +Y
Sbjct: 808 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 836
>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
(NDH-1, chain N)
Length = 494
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 224 FSLINFTIAIITGTIACMGCHWITGWNYRYNLNSMH--TVHTVTSCMSI*TNSMMNTSF 54
+SL+ I II+ +AC+ H+ + NY YN + + C+SI ++ + T F
Sbjct: 72 YSLLYIGIVIISSFLACIFSHYCSLTNYLYNFEEFYLLLLFCTIGCVSIIISNNLCTFF 130
>sp|Q07202|CORA_MEDSA Cold and drought-regulated protein CORA
Length = 204
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +3
Query: 51 GKAGVHHGVGLYGH-AAGHGMYGVHG 125
G+ G +HG G Y H GHG +G HG
Sbjct: 160 GRGGYNHGGGGYNHGGGGHGGHGGHG 185
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 42 GY-YGKAGVHHGVGLYGHAAGHGMYGVHG 125
GY +G G +HG G +G GHG +G HG
Sbjct: 163 GYNHGGGGYNHGGGGHGGHGGHGGHGGHG 191
>sp|Q6F4C6|PMN14_PINFU Prismalin-14 precursor
Length = 121
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +3
Query: 42 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYG 206
GY G G + G+GLYG G G YG GY + YG G D G
Sbjct: 70 GYGGFNGGYGGLGLYGGYGGFGGYGYRPFSY------GYNPFSYGYYGFGDDDGG 118
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,532,490
Number of Sequences: 369166
Number of extensions: 601910
Number of successful extensions: 2188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2154
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)