Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_L08
(258 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor 32 0.45
sp|P46526|CS66_WHEAT Cold shock protein CS66 31 1.00
sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor 31 1.00
sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor 31 1.00
sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2 30 1.3
sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2 30 1.3
sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (N... 30 1.3
sp|Q07202|CORA_MEDSA Cold and drought-regulated protein CORA 30 1.7
sp|Q6F4C6|PMN14_PINFU Prismalin-14 precursor 30 1.7
sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoprotei... 30 2.2
>sp|P04929|HRPX_PLALO Histidine-rich glycoprotein precursor
Length = 351
Score = 32.0 bits (71), Expect = 0.45
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = -3
Query: 196 HHSYHNRDHSLHGVPLDNRLELQV*LALHAHRTYRDQLHVHINQLHDEHQLFHNNH 29
HH +H+ H HG H H + H H + HD H H++H
Sbjct: 231 HHGHHHHHHHHHGH--------------HHHHHHHHDAHHHHHHHHDAHHHHHHHH 272
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/56 (25%), Positives = 21/56 (37%)
Frame = -3
Query: 196 HHSYHNRDHSLHGVPLDNRLELQV*LALHAHRTYRDQLHVHINQLHDEHQLFHNNH 29
HH +H+ H H + H H + H H + HD H H++H
Sbjct: 241 HHGHHHHHHHHHDAHHHHHHHHDA----HHHHHHHHDAHHHHHHHHDAHHHHHHHH 292
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = -3
Query: 196 HHSYHNRDHSLHGVPLDNRLELQV*LALHAHRTYRDQLHVHINQLHDEHQLFHNNH 29
HH +H+ H H D H H + H H + HD H H++H
Sbjct: 247 HHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 302
Score = 29.3 bits (64), Expect = 2.9
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = -3
Query: 196 HHSYHNRDHSLHGVPLDNRLELQV*LALHAHRTYRDQLHVHINQLHDEHQLFHNNH 29
HH +H+ D H D H H + H H + HD H H++H
Sbjct: 296 HHHHHHHDAHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHH 351
>sp|P46526|CS66_WHEAT Cold shock protein CS66
Length = 469
Score = 30.8 bits (68), Expect = 1.00
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 19 VAANGYYGKAGVHHGVGLYGHAAGHGMYGVHG 114
+A G YG+ G H G ++G A +G YG HG
Sbjct: 113 LATGGTYGQQG-HTGTAMHGTPATNGTYGEHG 143
>sp|P17139|CO4A1_CAEEL Collagen alpha 1(IV) chain precursor
Length = 1759
Score = 30.8 bits (68), Expect = 1.00
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Frame = +1
Query: 31 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPA-----GYPMAPHASYGPGY 183
GY G+ G+ G GH G GV GV+ +P + GYP AP A GY
Sbjct: 1322 GYPGERGLPGLDGKRGHDGLPGAPGVPGVEGVPGLEGDCGEDGYPGAPGAPGSNGY 1377
>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
Length = 1356
Score = 30.8 bits (68), Expect = 1.00
Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = +1
Query: 31 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIP--VIPAGYP-----MAPHASYGPGYDS 189
G G AG H G G A GHG G G + P + PAG P P G GYD
Sbjct: 1045 GPRGPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGHLGPAGPPGSPGLPGPAGPAGGGYDQ 1104
Query: 190 YG 195
G
Sbjct: 1105 SG 1106
>sp|Q99MR6|ARS2_MOUSE Arsenite-resistance protein 2
Length = 875
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 100 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 192
YG V+ P +P G P PHA YG G +Y
Sbjct: 807 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 835
>sp|Q9BXP5|ARS2_HUMAN Arsenite-resistance protein 2
Length = 876
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 100 YGVHGVQVIPVIPAGYPMAPHASYGPGYDSY 192
YG V+ P +P G P PHA YG G +Y
Sbjct: 808 YGAGAVR--PAVPTGGPPYPHAPYGAGRGNY 836
>sp|Q89AT4|NUON_BUCBP NADH-quinone oxidoreductase chain N (NADH dehydrogenase I, chain N)
(NDH-1, chain N)
Length = 494
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -1
Query: 213 FSLINFTIAIITGTIACMGCHWITGWNYRYNLHSMH--TVHTVTSCMSI*TNSMMNTSF 43
+SL+ I II+ +AC+ H+ + NY YN + + C+SI ++ + T F
Sbjct: 72 YSLLYIGIVIISSFLACIFSHYCSLTNYLYNFEEFYLLLLFCTIGCVSIIISNNLCTFF 130
>sp|Q07202|CORA_MEDSA Cold and drought-regulated protein CORA
Length = 204
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 40 GKAGVHHGVGLYGH-AAGHGMYGVHG 114
G+ G +HG G Y H GHG +G HG
Sbjct: 160 GRGGYNHGGGGYNHGGGGHGGHGGHG 185
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 31 GY-YGKAGVHHGVGLYGHAAGHGMYGVHG 114
GY +G G +HG G +G GHG +G HG
Sbjct: 163 GYNHGGGGYNHGGGGHGGHGGHGGHGGHG 191
>sp|Q6F4C6|PMN14_PINFU Prismalin-14 precursor
Length = 121
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/55 (36%), Positives = 23/55 (41%)
Frame = +1
Query: 31 GYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYG 195
GY G G + G+GLYG G G YG GY + YG G D G
Sbjct: 70 GYGGFNGGYGGLGLYGGYGGFGGYGYRPFSY------GYNPFSYGYYGFGDDDGG 118
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 / hnRNP
B1)
Length = 353
Score = 29.6 bits (65), Expect = 2.2
Identities = 21/56 (37%), Positives = 24/56 (42%)
Frame = +1
Query: 28 NGYYGKAGVHHGVGLYGHAAGHGMYGVHGVQVIPVIPAGYPMAPHASYGPGYDSYG 195
NGY G G + G G+ G G YG G GY YG GYD+YG
Sbjct: 245 NGYGGGPGGGNFGGSPGYGGGRGGYGGGG--------PGYG-NQGGGYGGGYDNYG 291
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,960,800
Number of Sequences: 369166
Number of extensions: 577012
Number of successful extensions: 2096
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2065
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)