Planarian EST Database

DrC_01091

Cluster detail
GO Category :
Consensus Sequence :
>DrC_01091 GAATTTATTTAAATTGTTTTAATATCAGATATTTACTAGAACATAAAATATTAATGGCCT CTTCAAGTGTCCCATCCGTTCAGGTTTTTGGACGTAAGAAAACTGCTACTGCTGTTGCTT TATGTAAAGCTGGTAAAGGAAACATCCGAGTTAATGGTCATCCAATTGAATTAGTTCAAC CAAGTCCATTGCAAGCTAAACTCCAAGAACCCTTGTTGATTCTTGGAGAAGAAAGACTTA AACAATTAGACATTAAAATCCGTGTTAAGGGTGGTGGTAAAAACTCACAAATTTATGCCA TTAGACAAGCTTTGGCTAAATCTTGTGTTGCTTATTATCAGAAATTTGTTGATGAACAAT CCAAAAGAGAATTGAAAGAAAGCTTTATTCGTTATGATAGAAGTTTACTTGTTGCTGATC CAAGAAGATGCGAAGCTAAGAAATTCGGTGGTCCAGGTGCAAGAGCAAGATACCAAAAAT CATATCGTTAATCGTTCAATAAATATTTACTGGAT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01091
         (515 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q98TR7|RS16_HETFO  40S ribosomal protein S16                   205   5e-53
sp|Q22054|RS16_CAEEL  40S ribosomal protein S16                   205   6e-53
sp|Q90YQ7|RS16_ICTPU  40S ribosomal protein S16                   204   1e-52
sp|P62250|RS16_RAT  40S ribosomal protein S16 >gi|54039372|s...   204   1e-52
sp|Q95V31|RS16_SPOFR  40S ribosomal protein S16                   202   4e-52
sp|P62251|RS16_AEDAE  40S ribosomal protein S16                   200   1e-51
sp|Q9W237|RS16_DROME  40S ribosomal protein S16                   200   2e-51
sp|P46293|RS16_GOSHI  40S ribosomal protein S16                   195   5e-50
sp|O22647|RS16_FRIAG  40S ribosomal protein S16                   195   5e-50
sp|P46294|RS16_ORYSA  40S ribosomal protein S16                   191   9e-49

>sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16
          Length = 146

 Score =  205 bits (522), Expect = 5e-53
 Identities = 98/144 (68%), Positives = 122/144 (84%)
 Frame = +3

Query: 57  ASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEER 236
           A   + SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER
Sbjct: 3   AKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKER 62

Query: 237 LKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVA 416
              +DI++RVKGGG  +Q+YAIRQA++K+ VAYYQK+VDE SK+E+K+  I+YDR+LLVA
Sbjct: 63  FAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122

Query: 417 DPRRCEAKKFGGPGARARYQKSYR 488
           DPRRCE+KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146

>sp|Q22054|RS16_CAEEL 40S ribosomal protein S16
          Length = 144

 Score =  205 bits (521), Expect = 6e-53
 Identities = 101/143 (70%), Positives = 121/143 (84%)
 Frame = +3

Query: 60  SSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERL 239
           +S+V SVQ FGRKKTATAVA CK G+G I+VNG P+E ++P  L+ KLQEPLL++G+ER 
Sbjct: 2   TSTVQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERF 61

Query: 240 KQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVAD 419
           + +DI+IRV GGG  +QIYA+RQALAK+ VAYY K+VDEQSKRELK  F  YD+SLLVAD
Sbjct: 62  QDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVAD 121

Query: 420 PRRCEAKKFGGPGARARYQKSYR 488
           PRR E+KKFGGPGARARYQKSYR
Sbjct: 122 PRRRESKKFGGPGARARYQKSYR 144

>sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16
          Length = 146

 Score =  204 bits (519), Expect = 1e-52
 Identities = 97/144 (67%), Positives = 122/144 (84%)
 Frame = +3

Query: 57  ASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEER 236
           A   + SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER
Sbjct: 3   AKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKER 62

Query: 237 LKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVA 416
              +DI++RVKGGG  +Q+YAIRQ+++K+ VAYYQK+VDE SK+E+K+  I+YDR+LLVA
Sbjct: 63  FAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122

Query: 417 DPRRCEAKKFGGPGARARYQKSYR 488
           DPRRCE+KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146

>sp|P62250|RS16_RAT 40S ribosomal protein S16
 sp|P14131|RS16_MOUSE 40S ribosomal protein S16
 sp|Q29201|RS16_PIG 40S ribosomal protein S16
 sp|P62249|RS16_HUMAN 40S ribosomal protein S16
          Length = 146

 Score =  204 bits (518), Expect = 1e-52
 Identities = 97/138 (70%), Positives = 120/138 (86%)
 Frame = +3

Query: 75  SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 254
           SVQVFGRKKTATAVA CK G G I+VNG P+E+++P  LQ KL EP+L+LG+ER   +DI
Sbjct: 9   SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDI 68

Query: 255 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 434
           ++RVKGGG  +QIYAIRQ+++K+ VAYYQK+VDE SK+E+K+  I+YDR+LLVADPRRCE
Sbjct: 69  RVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128

Query: 435 AKKFGGPGARARYQKSYR 488
           +KKFGGPGARARYQKSYR
Sbjct: 129 SKKFGGPGARARYQKSYR 146

>sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16
          Length = 151

 Score =  202 bits (514), Expect = 4e-52
 Identities = 94/140 (67%), Positives = 120/140 (85%)
 Frame = +3

Query: 69  VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 248
           + +VQVFGRKKTATAVA CK G G +RVNG P++LV+P  LQ KLQEP+L+LG+E+   +
Sbjct: 12  IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 71

Query: 249 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 428
           DI++ VKGGG  +Q+YAIRQA++K+ +A+YQK+VDE SK+E+K+  ++YDRSLLVADPRR
Sbjct: 72  DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 131

Query: 429 CEAKKFGGPGARARYQKSYR 488
           CE KKFGGPGARARYQKSYR
Sbjct: 132 CEPKKFGGPGARARYQKSYR 151

>sp|P62251|RS16_AEDAE 40S ribosomal protein S16
          Length = 148

 Score =  200 bits (509), Expect = 1e-51
 Identities = 96/140 (68%), Positives = 119/140 (85%)
 Frame = +3

Query: 69  VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 248
           V +VQVFGRKKTATAVA CK GKG +RVNG P++ ++P  LQ KLQEPLL+LG+E+   +
Sbjct: 9   VNAVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGV 68

Query: 249 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 428
           DI+IRV GGG  +QIYAIRQA++K+ V++YQK+VDE S++ELK+   +YDR+LLVADPRR
Sbjct: 69  DIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRR 128

Query: 429 CEAKKFGGPGARARYQKSYR 488
           CE KKFGGPGARARYQKSYR
Sbjct: 129 CEPKKFGGPGARARYQKSYR 148

>sp|Q9W237|RS16_DROME 40S ribosomal protein S16
          Length = 148

 Score =  200 bits (508), Expect = 2e-51
 Identities = 94/140 (67%), Positives = 118/140 (84%)
 Frame = +3

Query: 69  VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 248
           V +VQVFGRKKTATAVA CK G G ++VNG P+E ++P  LQ KLQEPLL+LG+E+   +
Sbjct: 9   VQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGV 68

Query: 249 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 428
           DI++RV GGG  +QIYAIRQA++K+ VA+YQK+VDE SK+E+K+  ++YDR+LLV DPRR
Sbjct: 69  DIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRR 128

Query: 429 CEAKKFGGPGARARYQKSYR 488
           CE KKFGGPGARARYQKSYR
Sbjct: 129 CEPKKFGGPGARARYQKSYR 148

>sp|P46293|RS16_GOSHI 40S ribosomal protein S16
          Length = 145

 Score =  195 bits (496), Expect = 5e-50
 Identities = 94/145 (64%), Positives = 118/145 (81%)
 Frame = +3

Query: 54  MASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEE 233
           MA  ++ SVQ FGRKKTA AV  CK G+G I++NG PIELV+P  L+ K  EP+L+LG +
Sbjct: 1   MAEKAIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQ 60

Query: 234 RLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLV 413
           R   +D++IRVKGGG  SQIYAIRQ++AK+ VA+YQK+VDEQSK+E+K+  + YDR+LLV
Sbjct: 61  RFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLV 120

Query: 414 ADPRRCEAKKFGGPGARARYQKSYR 488
           ADPRRCE KKFGG GARAR+QKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145

>sp|O22647|RS16_FRIAG 40S ribosomal protein S16
          Length = 145

 Score =  195 bits (496), Expect = 5e-50
 Identities = 95/145 (65%), Positives = 119/145 (82%)
 Frame = +3

Query: 54  MASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEE 233
           MA+ +  SVQ FGRKKTA AV  CK G+G I+VNG PIELV+P  L+ K  EP+L+LG  
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 234 RLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLV 413
           R   +D++IRV+GGGK SQIYAIRQ++AK+ VAYYQK+VDEQ+K+E+K+  +RYDR+LLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 414 ADPRRCEAKKFGGPGARARYQKSYR 488
           ADPRRCE KKFGG GAR+R+QKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145

>sp|P46294|RS16_ORYSA 40S ribosomal protein S16
          Length = 149

 Score =  191 bits (485), Expect = 9e-49
 Identities = 92/138 (66%), Positives = 113/138 (81%)
 Frame = +3

Query: 75  SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 254
           +VQ FGRKK A AV+ CK G+G I+VNG PIEL++P  L+ K  EP+L+ G  R K +D+
Sbjct: 12  TVQCFGRKKAAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDM 71

Query: 255 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 434
           +IRV+GGGK SQIYAIRQA+AK+ VAYYQK+VDE SK+E+K+ F RYDR+LLVADPRRCE
Sbjct: 72  RIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCE 131

Query: 435 AKKFGGPGARARYQKSYR 488
            KKFGG  ARAR+QKSYR
Sbjct: 132 PKKFGGRRARARFQKSYR 149

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,201,751
Number of Sequences: 369166
Number of extensions: 926536
Number of successful extensions: 2619
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2484
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01091

Planaria EST Database

DrC_01091

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail