Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01091 (515 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 205 5e-53 sp|Q22054|RS16_CAEEL 40S ribosomal protein S16 205 6e-53 sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 204 1e-52 sp|P62250|RS16_RAT 40S ribosomal protein S16 >gi|54039372|s... 204 1e-52 sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 202 4e-52 sp|P62251|RS16_AEDAE 40S ribosomal protein S16 200 1e-51 sp|Q9W237|RS16_DROME 40S ribosomal protein S16 200 2e-51 sp|P46293|RS16_GOSHI 40S ribosomal protein S16 195 5e-50 sp|O22647|RS16_FRIAG 40S ribosomal protein S16 195 5e-50 sp|P46294|RS16_ORYSA 40S ribosomal protein S16 191 9e-49
>sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 Length = 146 Score = 205 bits (522), Expect = 5e-53 Identities = 98/144 (68%), Positives = 122/144 (84%) Frame = +3 Query: 57 ASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEER 236 A + SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER Sbjct: 3 AKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKER 62 Query: 237 LKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVA 416 +DI++RVKGGG +Q+YAIRQA++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVA Sbjct: 63 FAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122 Query: 417 DPRRCEAKKFGGPGARARYQKSYR 488 DPRRCE+KKFGGPGARARYQKSYR Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>sp|Q22054|RS16_CAEEL 40S ribosomal protein S16 Length = 144 Score = 205 bits (521), Expect = 6e-53 Identities = 101/143 (70%), Positives = 121/143 (84%) Frame = +3 Query: 60 SSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERL 239 +S+V SVQ FGRKKTATAVA CK G+G I+VNG P+E ++P L+ KLQEPLL++G+ER Sbjct: 2 TSTVQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERF 61 Query: 240 KQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVAD 419 + +DI+IRV GGG +QIYA+RQALAK+ VAYY K+VDEQSKRELK F YD+SLLVAD Sbjct: 62 QDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVAD 121 Query: 420 PRRCEAKKFGGPGARARYQKSYR 488 PRR E+KKFGGPGARARYQKSYR Sbjct: 122 PRRRESKKFGGPGARARYQKSYR 144
>sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 Length = 146 Score = 204 bits (519), Expect = 1e-52 Identities = 97/144 (67%), Positives = 122/144 (84%) Frame = +3 Query: 57 ASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEER 236 A + SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER Sbjct: 3 AKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKER 62 Query: 237 LKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVA 416 +DI++RVKGGG +Q+YAIRQ+++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVA Sbjct: 63 FAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122 Query: 417 DPRRCEAKKFGGPGARARYQKSYR 488 DPRRCE+KKFGGPGARARYQKSYR Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>sp|P62250|RS16_RAT 40S ribosomal protein S16 sp|P14131|RS16_MOUSE 40S ribosomal protein S16 sp|Q29201|RS16_PIG 40S ribosomal protein S16 sp|P62249|RS16_HUMAN 40S ribosomal protein S16 Length = 146 Score = 204 bits (518), Expect = 1e-52 Identities = 97/138 (70%), Positives = 120/138 (86%) Frame = +3 Query: 75 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 254 SVQVFGRKKTATAVA CK G G I+VNG P+E+++P LQ KL EP+L+LG+ER +DI Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDI 68 Query: 255 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 434 ++RVKGGG +QIYAIRQ+++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVADPRRCE Sbjct: 69 RVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128 Query: 435 AKKFGGPGARARYQKSYR 488 +KKFGGPGARARYQKSYR Sbjct: 129 SKKFGGPGARARYQKSYR 146
>sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 Length = 151 Score = 202 bits (514), Expect = 4e-52 Identities = 94/140 (67%), Positives = 120/140 (85%) Frame = +3 Query: 69 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 248 + +VQVFGRKKTATAVA CK G G +RVNG P++LV+P LQ KLQEP+L+LG+E+ + Sbjct: 12 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 71 Query: 249 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 428 DI++ VKGGG +Q+YAIRQA++K+ +A+YQK+VDE SK+E+K+ ++YDRSLLVADPRR Sbjct: 72 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 131 Query: 429 CEAKKFGGPGARARYQKSYR 488 CE KKFGGPGARARYQKSYR Sbjct: 132 CEPKKFGGPGARARYQKSYR 151
>sp|P62251|RS16_AEDAE 40S ribosomal protein S16 Length = 148 Score = 200 bits (509), Expect = 1e-51 Identities = 96/140 (68%), Positives = 119/140 (85%) Frame = +3 Query: 69 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 248 V +VQVFGRKKTATAVA CK GKG +RVNG P++ ++P LQ KLQEPLL+LG+E+ + Sbjct: 9 VNAVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGV 68 Query: 249 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 428 DI+IRV GGG +QIYAIRQA++K+ V++YQK+VDE S++ELK+ +YDR+LLVADPRR Sbjct: 69 DIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRR 128 Query: 429 CEAKKFGGPGARARYQKSYR 488 CE KKFGGPGARARYQKSYR Sbjct: 129 CEPKKFGGPGARARYQKSYR 148
>sp|Q9W237|RS16_DROME 40S ribosomal protein S16 Length = 148 Score = 200 bits (508), Expect = 2e-51 Identities = 94/140 (67%), Positives = 118/140 (84%) Frame = +3 Query: 69 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 248 V +VQVFGRKKTATAVA CK G G ++VNG P+E ++P LQ KLQEPLL+LG+E+ + Sbjct: 9 VQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGV 68 Query: 249 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 428 DI++RV GGG +QIYAIRQA++K+ VA+YQK+VDE SK+E+K+ ++YDR+LLV DPRR Sbjct: 69 DIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRR 128 Query: 429 CEAKKFGGPGARARYQKSYR 488 CE KKFGGPGARARYQKSYR Sbjct: 129 CEPKKFGGPGARARYQKSYR 148
>sp|P46293|RS16_GOSHI 40S ribosomal protein S16 Length = 145 Score = 195 bits (496), Expect = 5e-50 Identities = 94/145 (64%), Positives = 118/145 (81%) Frame = +3 Query: 54 MASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEE 233 MA ++ SVQ FGRKKTA AV CK G+G I++NG PIELV+P L+ K EP+L+LG + Sbjct: 1 MAEKAIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQ 60 Query: 234 RLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLV 413 R +D++IRVKGGG SQIYAIRQ++AK+ VA+YQK+VDEQSK+E+K+ + YDR+LLV Sbjct: 61 RFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLV 120 Query: 414 ADPRRCEAKKFGGPGARARYQKSYR 488 ADPRRCE KKFGG GARAR+QKSYR Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145
>sp|O22647|RS16_FRIAG 40S ribosomal protein S16 Length = 145 Score = 195 bits (496), Expect = 5e-50 Identities = 95/145 (65%), Positives = 119/145 (82%) Frame = +3 Query: 54 MASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEE 233 MA+ + SVQ FGRKKTA AV CK G+G I+VNG PIELV+P L+ K EP+L+LG Sbjct: 1 MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60 Query: 234 RLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLV 413 R +D++IRV+GGGK SQIYAIRQ++AK+ VAYYQK+VDEQ+K+E+K+ +RYDR+LLV Sbjct: 61 RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120 Query: 414 ADPRRCEAKKFGGPGARARYQKSYR 488 ADPRRCE KKFGG GAR+R+QKSYR Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145
>sp|P46294|RS16_ORYSA 40S ribosomal protein S16 Length = 149 Score = 191 bits (485), Expect = 9e-49 Identities = 92/138 (66%), Positives = 113/138 (81%) Frame = +3 Query: 75 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 254 +VQ FGRKK A AV+ CK G+G I+VNG PIEL++P L+ K EP+L+ G R K +D+ Sbjct: 12 TVQCFGRKKAAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDM 71 Query: 255 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 434 +IRV+GGGK SQIYAIRQA+AK+ VAYYQK+VDE SK+E+K+ F RYDR+LLVADPRRCE Sbjct: 72 RIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCE 131 Query: 435 AKKFGGPGARARYQKSYR 488 KKFGG ARAR+QKSYR Sbjct: 132 PKKFGGRRARARFQKSYR 149
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,201,751 Number of Sequences: 369166 Number of extensions: 926536 Number of successful extensions: 2619 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2452 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2484 length of database: 68,354,980 effective HSP length: 103 effective length of database: 49,327,275 effective search space used: 3354254700 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)