Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_J05
(515 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22054|RS16_CAEEL 40S ribosomal protein S16 205 5e-53
sp|P62251|RS16_AEDAE 40S ribosomal protein S16 203 2e-52
sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 202 4e-52
sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 201 9e-52
sp|P62250|RS16_RAT 40S ribosomal protein S16 >gi|54039372|s... 201 1e-51
sp|Q9W237|RS16_DROME 40S ribosomal protein S16 200 1e-51
sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 199 3e-51
sp|O22647|RS16_FRIAG 40S ribosomal protein S16 193 2e-49
sp|P46293|RS16_GOSHI 40S ribosomal protein S16 192 4e-49
sp|P46294|RS16_ORYSA 40S ribosomal protein S16 189 4e-48
>sp|Q22054|RS16_CAEEL 40S ribosomal protein S16
Length = 144
Score = 205 bits (522), Expect = 5e-53
Identities = 101/143 (70%), Positives = 122/143 (85%)
Frame = +3
Query: 60 SSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERL 239
+S+V SVQ FGRKKTATAVA CK G+G I+VNG P+E ++P L+ KLQEPLL++G+ER
Sbjct: 2 TSTVQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERF 61
Query: 240 KQLDIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSRRELKESFIRYDRSLLVAD 419
+ +DI+IRVSGGG +QIYA+RQALAK+ VAYY K+VDEQS+RELK F YD+SLLVAD
Sbjct: 62 QDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVAD 121
Query: 420 PRRCEAKKFGGPGARARYQKSYR 488
PRR E+KKFGGPGARARYQKSYR
Sbjct: 122 PRRRESKKFGGPGARARYQKSYR 144
>sp|P62251|RS16_AEDAE 40S ribosomal protein S16
Length = 148
Score = 203 bits (516), Expect = 2e-52
Identities = 98/140 (70%), Positives = 120/140 (85%)
Frame = +3
Query: 69 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 248
V +VQVFGRKKTATAVA CK GKG +RVNG P++ ++P LQ KLQEPLL+LG+E+ +
Sbjct: 9 VNAVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGV 68
Query: 249 DIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSRRELKESFIRYDRSLLVADPRR 428
DI+IRVSGGG +QIYAIRQA++K+ V++YQK+VDE SR+ELK+ +YDR+LLVADPRR
Sbjct: 69 DIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRR 128
Query: 429 CEAKKFGGPGARARYQKSYR 488
CE KKFGGPGARARYQKSYR
Sbjct: 129 CEPKKFGGPGARARYQKSYR 148
>sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16
Length = 146
Score = 202 bits (514), Expect = 4e-52
Identities = 96/144 (66%), Positives = 121/144 (84%)
Frame = +3
Query: 57 ASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEER 236
A + SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER
Sbjct: 3 AKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKER 62
Query: 237 LKQLDIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSRRELKESFIRYDRSLLVA 416
+DI++RV GGG +Q+YAIRQA++K+ VAYYQK+VDE S++E+K+ I+YDR+LLVA
Sbjct: 63 FAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122
Query: 417 DPRRCEAKKFGGPGARARYQKSYR 488
DPRRCE+KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16
Length = 146
Score = 201 bits (511), Expect = 9e-52
Identities = 95/144 (65%), Positives = 121/144 (84%)
Frame = +3
Query: 57 ASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEER 236
A + SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER
Sbjct: 3 AKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKER 62
Query: 237 LKQLDIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSRRELKESFIRYDRSLLVA 416
+DI++RV GGG +Q+YAIRQ+++K+ VAYYQK+VDE S++E+K+ I+YDR+LLVA
Sbjct: 63 FAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122
Query: 417 DPRRCEAKKFGGPGARARYQKSYR 488
DPRRCE+KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>sp|P62250|RS16_RAT 40S ribosomal protein S16
sp|P14131|RS16_MOUSE 40S ribosomal protein S16
sp|Q29201|RS16_PIG 40S ribosomal protein S16
sp|P62249|RS16_HUMAN 40S ribosomal protein S16
Length = 146
Score = 201 bits (510), Expect = 1e-51
Identities = 95/138 (68%), Positives = 119/138 (86%)
Frame = +3
Query: 75 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 254
SVQVFGRKKTATAVA CK G G I+VNG P+E+++P LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDI 68
Query: 255 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSRRELKESFIRYDRSLLVADPRRCE 434
++RV GGG +QIYAIRQ+++K+ VAYYQK+VDE S++E+K+ I+YDR+LLVADPRRCE
Sbjct: 69 RVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Query: 435 AKKFGGPGARARYQKSYR 488
+KKFGGPGARARYQKSYR
Sbjct: 129 SKKFGGPGARARYQKSYR 146
>sp|Q9W237|RS16_DROME 40S ribosomal protein S16
Length = 148
Score = 200 bits (509), Expect = 1e-51
Identities = 94/140 (67%), Positives = 119/140 (85%)
Frame = +3
Query: 69 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 248
V +VQVFGRKKTATAVA CK G G ++VNG P+E ++P LQ KLQEPLL+LG+E+ +
Sbjct: 9 VQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGV 68
Query: 249 DIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSRRELKESFIRYDRSLLVADPRR 428
DI++RVSGGG +QIYAIRQA++K+ VA+YQK+VDE S++E+K+ ++YDR+LLV DPRR
Sbjct: 69 DIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRR 128
Query: 429 CEAKKFGGPGARARYQKSYR 488
CE KKFGGPGARARYQKSYR
Sbjct: 129 CEPKKFGGPGARARYQKSYR 148
>sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16
Length = 151
Score = 199 bits (506), Expect = 3e-51
Identities = 92/140 (65%), Positives = 119/140 (85%)
Frame = +3
Query: 69 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 248
+ +VQVFGRKKTATAVA CK G G +RVNG P++LV+P LQ KLQEP+L+LG+E+ +
Sbjct: 12 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 71
Query: 249 DIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSRRELKESFIRYDRSLLVADPRR 428
DI++ V GGG +Q+YAIRQA++K+ +A+YQK+VDE S++E+K+ ++YDRSLLVADPRR
Sbjct: 72 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 131
Query: 429 CEAKKFGGPGARARYQKSYR 488
CE KKFGGPGARARYQKSYR
Sbjct: 132 CEPKKFGGPGARARYQKSYR 151
>sp|O22647|RS16_FRIAG 40S ribosomal protein S16
Length = 145
Score = 193 bits (490), Expect = 2e-49
Identities = 94/145 (64%), Positives = 118/145 (81%)
Frame = +3
Query: 54 MASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEE 233
MA+ + SVQ FGRKKTA AV CK G+G I+VNG PIELV+P L+ K EP+L+LG
Sbjct: 1 MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60
Query: 234 RLKQLDIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSRRELKESFIRYDRSLLV 413
R +D++IRV GGGK SQIYAIRQ++AK+ VAYYQK+VDEQ+++E+K+ +RYDR+LLV
Sbjct: 61 RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120
Query: 414 ADPRRCEAKKFGGPGARARYQKSYR 488
ADPRRCE KKFGG GAR+R+QKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145
>sp|P46293|RS16_GOSHI 40S ribosomal protein S16
Length = 145
Score = 192 bits (488), Expect = 4e-49
Identities = 92/145 (63%), Positives = 117/145 (80%)
Frame = +3
Query: 54 MASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEE 233
MA ++ SVQ FGRKKTA AV CK G+G I++NG PIELV+P L+ K EP+L+LG +
Sbjct: 1 MAEKAIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQ 60
Query: 234 RLKQLDIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSRRELKESFIRYDRSLLV 413
R +D++IRV GGG SQIYAIRQ++AK+ VA+YQK+VDEQS++E+K+ + YDR+LLV
Sbjct: 61 RFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLV 120
Query: 414 ADPRRCEAKKFGGPGARARYQKSYR 488
ADPRRCE KKFGG GARAR+QKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145
>sp|P46294|RS16_ORYSA 40S ribosomal protein S16
Length = 149
Score = 189 bits (479), Expect = 4e-48
Identities = 91/138 (65%), Positives = 112/138 (81%)
Frame = +3
Query: 75 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 254
+VQ FGRKK A AV+ CK G+G I+VNG PIEL++P L+ K EP+L+ G R K +D+
Sbjct: 12 TVQCFGRKKAAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDM 71
Query: 255 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSRRELKESFIRYDRSLLVADPRRCE 434
+IRV GGGK SQIYAIRQA+AK+ VAYYQK+VDE S++E+K+ F RYDR+LLVADPRRCE
Sbjct: 72 RIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCE 131
Query: 435 AKKFGGPGARARYQKSYR 488
KKFGG ARAR+QKSYR
Sbjct: 132 PKKFGGRRARARFQKSYR 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,634,863
Number of Sequences: 369166
Number of extensions: 874319
Number of successful extensions: 2554
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2419
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)