Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_D12
(486 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22054|RS16_CAEEL 40S ribosomal protein S16 206 2e-53
sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 203 1e-52
sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 202 3e-52
sp|P62250|RS16_RAT 40S ribosomal protein S16 >gi|54039372|s... 202 4e-52
sp|P62251|RS16_AEDAE 40S ribosomal protein S16 202 4e-52
sp|Q9W237|RS16_DROME 40S ribosomal protein S16 201 6e-52
sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 200 1e-51
sp|O22647|RS16_FRIAG 40S ribosomal protein S16 194 9e-50
sp|P46293|RS16_GOSHI 40S ribosomal protein S16 193 2e-49
sp|P46294|RS16_ORYSA 40S ribosomal protein S16 190 2e-48
>sp|Q22054|RS16_CAEEL 40S ribosomal protein S16
Length = 144
Score = 206 bits (525), Expect = 2e-53
Identities = 102/143 (71%), Positives = 122/143 (85%)
Frame = +3
Query: 33 SSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERL 212
+S+V SVQ FGRKKTATAVA CK G+G I+VNG P+E ++P L+ KLQEPLL++G+ER
Sbjct: 2 TSTVQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERF 61
Query: 213 KQLDIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVAD 392
+ +DI+IRVSGGG +QIYA+RQALAK+ VAYY K+VDEQSKRELK F YD+SLLVAD
Sbjct: 62 QDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVAD 121
Query: 393 PRRCEAKKFGGPGARARYQKSYR 461
PRR E+KKFGGPGARARYQKSYR
Sbjct: 122 PRRRESKKFGGPGARARYQKSYR 144
>sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16
Length = 146
Score = 203 bits (517), Expect = 1e-52
Identities = 97/144 (67%), Positives = 121/144 (84%)
Frame = +3
Query: 30 ASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEER 209
A + SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER
Sbjct: 3 AKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKER 62
Query: 210 LKQLDIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVA 389
+DI++RV GGG +Q+YAIRQA++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVA
Sbjct: 63 FAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122
Query: 390 DPRRCEAKKFGGPGARARYQKSYR 461
DPRRCE+KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16
Length = 146
Score = 202 bits (514), Expect = 3e-52
Identities = 96/144 (66%), Positives = 121/144 (84%)
Frame = +3
Query: 30 ASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEER 209
A + SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER
Sbjct: 3 AKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKER 62
Query: 210 LKQLDIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVA 389
+DI++RV GGG +Q+YAIRQ+++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVA
Sbjct: 63 FAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122
Query: 390 DPRRCEAKKFGGPGARARYQKSYR 461
DPRRCE+KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>sp|P62250|RS16_RAT 40S ribosomal protein S16
sp|P14131|RS16_MOUSE 40S ribosomal protein S16
sp|Q29201|RS16_PIG 40S ribosomal protein S16
sp|P62249|RS16_HUMAN 40S ribosomal protein S16
Length = 146
Score = 202 bits (513), Expect = 4e-52
Identities = 96/138 (69%), Positives = 119/138 (86%)
Frame = +3
Query: 48 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 227
SVQVFGRKKTATAVA CK G G I+VNG P+E+++P LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDI 68
Query: 228 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 407
++RV GGG +QIYAIRQ+++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVADPRRCE
Sbjct: 69 RVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Query: 408 AKKFGGPGARARYQKSYR 461
+KKFGGPGARARYQKSYR
Sbjct: 129 SKKFGGPGARARYQKSYR 146
>sp|P62251|RS16_AEDAE 40S ribosomal protein S16
Length = 148
Score = 202 bits (513), Expect = 4e-52
Identities = 97/140 (69%), Positives = 120/140 (85%)
Frame = +3
Query: 42 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 221
V +VQVFGRKKTATAVA CK GKG +RVNG P++ ++P LQ KLQEPLL+LG+E+ +
Sbjct: 9 VNAVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGV 68
Query: 222 DIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 401
DI+IRVSGGG +QIYAIRQA++K+ V++YQK+VDE S++ELK+ +YDR+LLVADPRR
Sbjct: 69 DIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRR 128
Query: 402 CEAKKFGGPGARARYQKSYR 461
CE KKFGGPGARARYQKSYR
Sbjct: 129 CEPKKFGGPGARARYQKSYR 148
>sp|Q9W237|RS16_DROME 40S ribosomal protein S16
Length = 148
Score = 201 bits (512), Expect = 6e-52
Identities = 95/140 (67%), Positives = 119/140 (85%)
Frame = +3
Query: 42 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 221
V +VQVFGRKKTATAVA CK G G ++VNG P+E ++P LQ KLQEPLL+LG+E+ +
Sbjct: 9 VQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGV 68
Query: 222 DIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 401
DI++RVSGGG +QIYAIRQA++K+ VA+YQK+VDE SK+E+K+ ++YDR+LLV DPRR
Sbjct: 69 DIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRR 128
Query: 402 CEAKKFGGPGARARYQKSYR 461
CE KKFGGPGARARYQKSYR
Sbjct: 129 CEPKKFGGPGARARYQKSYR 148
>sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16
Length = 151
Score = 200 bits (509), Expect = 1e-51
Identities = 93/140 (66%), Positives = 119/140 (85%)
Frame = +3
Query: 42 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 221
+ +VQVFGRKKTATAVA CK G G +RVNG P++LV+P LQ KLQEP+L+LG+E+ +
Sbjct: 12 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 71
Query: 222 DIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 401
DI++ V GGG +Q+YAIRQA++K+ +A+YQK+VDE SK+E+K+ ++YDRSLLVADPRR
Sbjct: 72 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 131
Query: 402 CEAKKFGGPGARARYQKSYR 461
CE KKFGGPGARARYQKSYR
Sbjct: 132 CEPKKFGGPGARARYQKSYR 151
>sp|O22647|RS16_FRIAG 40S ribosomal protein S16
Length = 145
Score = 194 bits (493), Expect = 9e-50
Identities = 95/145 (65%), Positives = 118/145 (81%)
Frame = +3
Query: 27 MASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEE 206
MA+ + SVQ FGRKKTA AV CK G+G I+VNG PIELV+P L+ K EP+L+LG
Sbjct: 1 MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60
Query: 207 RLKQLDIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLV 386
R +D++IRV GGGK SQIYAIRQ++AK+ VAYYQK+VDEQ+K+E+K+ +RYDR+LLV
Sbjct: 61 RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120
Query: 387 ADPRRCEAKKFGGPGARARYQKSYR 461
ADPRRCE KKFGG GAR+R+QKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145
>sp|P46293|RS16_GOSHI 40S ribosomal protein S16
Length = 145
Score = 193 bits (491), Expect = 2e-49
Identities = 93/145 (64%), Positives = 117/145 (80%)
Frame = +3
Query: 27 MASSSVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEE 206
MA ++ SVQ FGRKKTA AV CK G+G I++NG PIELV+P L+ K EP+L+LG +
Sbjct: 1 MAEKAIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQ 60
Query: 207 RLKQLDIKIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLV 386
R +D++IRV GGG SQIYAIRQ++AK+ VA+YQK+VDEQSK+E+K+ + YDR+LLV
Sbjct: 61 RFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLV 120
Query: 387 ADPRRCEAKKFGGPGARARYQKSYR 461
ADPRRCE KKFGG GARAR+QKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARARFQKSYR 145
>sp|P46294|RS16_ORYSA 40S ribosomal protein S16
Length = 149
Score = 190 bits (482), Expect = 2e-48
Identities = 92/138 (66%), Positives = 112/138 (81%)
Frame = +3
Query: 48 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 227
+VQ FGRKK A AV+ CK G+G I+VNG PIEL++P L+ K EP+L+ G R K +D+
Sbjct: 12 TVQCFGRKKAAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDM 71
Query: 228 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 407
+IRV GGGK SQIYAIRQA+AK+ VAYYQK+VDE SK+E+K+ F RYDR+LLVADPRRCE
Sbjct: 72 RIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCE 131
Query: 408 AKKFGGPGARARYQKSYR 461
KKFGG ARAR+QKSYR
Sbjct: 132 PKKFGGRRARARFQKSYR 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,182,596
Number of Sequences: 369166
Number of extensions: 845953
Number of successful extensions: 2456
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2321
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2921208590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)