Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_K01
(314 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22054|RS16_CAEEL 40S ribosomal protein S16 148 3e-36
sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 147 7e-36
sp|P62250|RS16_RAT 40S ribosomal protein S16 >gi|54039372|s... 146 1e-35
sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 146 2e-35
sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 145 3e-35
sp|Q9W237|RS16_DROME 40S ribosomal protein S16 144 6e-35
sp|P16149|RS16_LUPPO 40S ribosomal protein S16 143 1e-34
sp|P62251|RS16_AEDAE 40S ribosomal protein S16 143 1e-34
sp|P46294|RS16_ORYSA 40S ribosomal protein S16 143 1e-34
sp|O22647|RS16_FRIAG 40S ribosomal protein S16 141 4e-34
>sp|Q22054|RS16_CAEEL 40S ribosomal protein S16
Length = 144
Score = 148 bits (374), Expect = 3e-36
Identities = 72/96 (75%), Positives = 84/96 (87%)
Frame = +2
Query: 2 LQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKE 181
LQEPLL++G+ER + +DI+IRV GGG +QIYA+RQALAK+ VAYY K+VDEQSKRELK
Sbjct: 49 LQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKN 108
Query: 182 SFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 289
F YD+SLLVADPRR E+KKFGGPGARARYQKSYR
Sbjct: 109 IFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144
>sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16
Length = 146
Score = 147 bits (371), Expect = 7e-36
Identities = 68/96 (70%), Positives = 86/96 (89%)
Frame = +2
Query: 2 LQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKE 181
L EP+L+LG+ER +DI++RVKGGG +Q+YAIRQA++K+ VAYYQK+VDE SK+E+K+
Sbjct: 51 LLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKD 110
Query: 182 SFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 289
I+YDR+LLVADPRRCE+KKFGGPGARARYQKSYR
Sbjct: 111 ILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>sp|P62250|RS16_RAT 40S ribosomal protein S16
sp|P14131|RS16_MOUSE 40S ribosomal protein S16
sp|Q29201|RS16_PIG 40S ribosomal protein S16
sp|P62249|RS16_HUMAN 40S ribosomal protein S16
Length = 146
Score = 146 bits (369), Expect = 1e-35
Identities = 68/96 (70%), Positives = 86/96 (89%)
Frame = +2
Query: 2 LQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKE 181
L EP+L+LG+ER +DI++RVKGGG +QIYAIRQ+++K+ VAYYQK+VDE SK+E+K+
Sbjct: 51 LLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKD 110
Query: 182 SFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 289
I+YDR+LLVADPRRCE+KKFGGPGARARYQKSYR
Sbjct: 111 ILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16
Length = 146
Score = 146 bits (368), Expect = 2e-35
Identities = 67/96 (69%), Positives = 86/96 (89%)
Frame = +2
Query: 2 LQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKE 181
L EP+L+LG+ER +DI++RVKGGG +Q+YAIRQ+++K+ VAYYQK+VDE SK+E+K+
Sbjct: 51 LLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKD 110
Query: 182 SFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 289
I+YDR+LLVADPRRCE+KKFGGPGARARYQKSYR
Sbjct: 111 ILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16
Length = 151
Score = 145 bits (366), Expect = 3e-35
Identities = 65/96 (67%), Positives = 85/96 (88%)
Frame = +2
Query: 2 LQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKE 181
LQEP+L+LG+E+ +DI++ VKGGG +Q+YAIRQA++K+ +A+YQK+VDE SK+E+K+
Sbjct: 56 LQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKD 115
Query: 182 SFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 289
++YDRSLLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 116 ILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 151
>sp|Q9W237|RS16_DROME 40S ribosomal protein S16
Length = 148
Score = 144 bits (363), Expect = 6e-35
Identities = 66/96 (68%), Positives = 84/96 (87%)
Frame = +2
Query: 2 LQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKE 181
LQEPLL+LG+E+ +DI++RV GGG +QIYAIRQA++K+ VA+YQK+VDE SK+E+K+
Sbjct: 53 LQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKD 112
Query: 182 SFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 289
++YDR+LLV DPRRCE KKFGGPGARARYQKSYR
Sbjct: 113 ILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR 148
>sp|P16149|RS16_LUPPO 40S ribosomal protein S16
Length = 145
Score = 143 bits (360), Expect = 1e-34
Identities = 66/94 (70%), Positives = 83/94 (88%)
Frame = +2
Query: 8 EPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESF 187
EP+L+LG+ R +D++IRVKGGG SQIYAIRQ++AK+ VA+YQK+VDEQSK+E+K+
Sbjct: 52 EPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDIL 111
Query: 188 IRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 289
+RYDR+LLVADPRRCE KKFGG GARAR+QKSYR
Sbjct: 112 VRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145
>sp|P62251|RS16_AEDAE 40S ribosomal protein S16
Length = 148
Score = 143 bits (360), Expect = 1e-34
Identities = 67/96 (69%), Positives = 84/96 (87%)
Frame = +2
Query: 2 LQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKE 181
LQEPLL+LG+E+ +DI+IRV GGG +QIYAIRQA++K+ V++YQK+VDE S++ELK+
Sbjct: 53 LQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKD 112
Query: 182 SFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 289
+YDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 113 ILTQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148
>sp|P46294|RS16_ORYSA 40S ribosomal protein S16
Length = 149
Score = 143 bits (360), Expect = 1e-34
Identities = 67/94 (71%), Positives = 81/94 (86%)
Frame = +2
Query: 8 EPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESF 187
EP+L+ G R K +D++IRV+GGGK SQIYAIRQA+AK+ VAYYQK+VDE SK+E+K+ F
Sbjct: 56 EPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIF 115
Query: 188 IRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 289
RYDR+LLVADPRRCE KKFGG ARAR+QKSYR
Sbjct: 116 ARYDRTLLVADPRRCEPKKFGGRRARARFQKSYR 149
>sp|O22647|RS16_FRIAG 40S ribosomal protein S16
Length = 145
Score = 141 bits (356), Expect = 4e-34
Identities = 65/94 (69%), Positives = 83/94 (88%)
Frame = +2
Query: 8 EPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESF 187
EP+L+LG R +D++IRV+GGGK SQIYAIRQ++AK+ VAYYQK+VDEQ+K+E+K+
Sbjct: 52 EPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDIL 111
Query: 188 IRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 289
+RYDR+LLVADPRRCE KKFGG GAR+R+QKSYR
Sbjct: 112 MRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,902,727
Number of Sequences: 369166
Number of extensions: 539421
Number of successful extensions: 1599
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)