Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_A03
(391 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22054|RS16_CAEEL 40S ribosomal protein S16 145 3e-35
sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 143 1e-34
sp|P62250|RS16_RAT 40S ribosomal protein S16 >gi|54039372|s... 143 1e-34
sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 142 2e-34
sp|Q9W237|RS16_DROME 40S ribosomal protein S16 141 4e-34
sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 141 5e-34
sp|P62251|RS16_AEDAE 40S ribosomal protein S16 140 9e-34
sp|Q759L8|RS16_ASHGO 40S ribosomal protein S16 140 9e-34
sp|Q875N2|RS16_KLULA 40S ribosomal protein S16 139 2e-33
sp|Q6FR56|RS16_CANGA 40S ribosomal protein S16 139 2e-33
>sp|Q22054|RS16_CAEEL 40S ribosomal protein S16
Length = 144
Score = 145 bits (366), Expect = 3e-35
Identities = 71/111 (63%), Positives = 89/111 (80%)
Frame = +3
Query: 3 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 182
V SVQ FGRKKTATAVA CK G+G I+VNG P+E ++P L+ KLQEPLL++G+ER + +
Sbjct: 5 VQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDV 64
Query: 183 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRWSR 335
DI+IRV GGG +QIYA+RQALAK+ VAYY K+VDEQSKRELK F + +
Sbjct: 65 DIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDK 115
Score = 32.7 bits (73), Expect = 0.26
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 322 FVGPGARARYQKSYR 366
F GPGARARYQKSYR
Sbjct: 130 FGGPGARARYQKSYR 144
>sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16
Length = 146
Score = 143 bits (361), Expect = 1e-34
Identities = 68/109 (62%), Positives = 90/109 (82%)
Frame = +3
Query: 9 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 188
SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDI 68
Query: 189 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRWSR 335
++RVKGGG +Q+YAIRQA++K+ VAYYQK+VDE SK+E+K+ I++ R
Sbjct: 69 RVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDR 117
Score = 32.7 bits (73), Expect = 0.26
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 322 FVGPGARARYQKSYR 366
F GPGARARYQKSYR
Sbjct: 132 FGGPGARARYQKSYR 146
>sp|P62250|RS16_RAT 40S ribosomal protein S16
sp|P14131|RS16_MOUSE 40S ribosomal protein S16
sp|Q29201|RS16_PIG 40S ribosomal protein S16
sp|P62249|RS16_HUMAN 40S ribosomal protein S16
Length = 146
Score = 143 bits (360), Expect = 1e-34
Identities = 68/109 (62%), Positives = 90/109 (82%)
Frame = +3
Query: 9 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 188
SVQVFGRKKTATAVA CK G G I+VNG P+E+++P LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDI 68
Query: 189 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRWSR 335
++RVKGGG +QIYAIRQ+++K+ VAYYQK+VDE SK+E+K+ I++ R
Sbjct: 69 RVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDR 117
Score = 32.7 bits (73), Expect = 0.26
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 322 FVGPGARARYQKSYR 366
F GPGARARYQKSYR
Sbjct: 132 FGGPGARARYQKSYR 146
>sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16
Length = 146
Score = 142 bits (358), Expect = 2e-34
Identities = 67/109 (61%), Positives = 90/109 (82%)
Frame = +3
Query: 9 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 188
SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDI 68
Query: 189 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRWSR 335
++RVKGGG +Q+YAIRQ+++K+ VAYYQK+VDE SK+E+K+ I++ R
Sbjct: 69 RVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDR 117
Score = 32.7 bits (73), Expect = 0.26
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 322 FVGPGARARYQKSYR 366
F GPGARARYQKSYR
Sbjct: 132 FGGPGARARYQKSYR 146
>sp|Q9W237|RS16_DROME 40S ribosomal protein S16
Length = 148
Score = 141 bits (356), Expect = 4e-34
Identities = 66/111 (59%), Positives = 90/111 (81%)
Frame = +3
Query: 3 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 182
V +VQVFGRKKTATAVA CK G G ++VNG P+E ++P LQ KLQEPLL+LG+E+ +
Sbjct: 9 VQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGV 68
Query: 183 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRWSR 335
DI++RV GGG +QIYAIRQA++K+ VA+YQK+VDE SK+E+K+ +++ R
Sbjct: 69 DIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDR 119
Score = 32.7 bits (73), Expect = 0.26
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 322 FVGPGARARYQKSYR 366
F GPGARARYQKSYR
Sbjct: 134 FGGPGARARYQKSYR 148
>sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16
Length = 151
Score = 141 bits (355), Expect = 5e-34
Identities = 64/111 (57%), Positives = 91/111 (81%)
Frame = +3
Query: 3 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 182
+ +VQVFGRKKTATAVA CK G G +RVNG P++LV+P LQ KLQEP+L+LG+E+ +
Sbjct: 12 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 71
Query: 183 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRWSR 335
DI++ VKGGG +Q+YAIRQA++K+ +A+YQK+VDE SK+E+K+ +++ R
Sbjct: 72 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDR 122
Score = 32.7 bits (73), Expect = 0.26
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 322 FVGPGARARYQKSYR 366
F GPGARARYQKSYR
Sbjct: 137 FGGPGARARYQKSYR 151
>sp|P62251|RS16_AEDAE 40S ribosomal protein S16
Length = 148
Score = 140 bits (353), Expect = 9e-34
Identities = 67/111 (60%), Positives = 90/111 (81%)
Frame = +3
Query: 3 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 182
V +VQVFGRKKTATAVA CK GKG +RVNG P++ ++P LQ KLQEPLL+LG+E+ +
Sbjct: 9 VNAVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGV 68
Query: 183 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRWSR 335
DI+IRV GGG +QIYAIRQA++K+ V++YQK+VDE S++ELK+ ++ R
Sbjct: 69 DIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDR 119
Score = 32.7 bits (73), Expect = 0.26
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 322 FVGPGARARYQKSYR 366
F GPGARARYQKSYR
Sbjct: 134 FGGPGARARYQKSYR 148
>sp|Q759L8|RS16_ASHGO 40S ribosomal protein S16
Length = 143
Score = 140 bits (353), Expect = 9e-34
Identities = 70/111 (63%), Positives = 88/111 (79%)
Frame = +3
Query: 3 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 182
VPSVQ FG+KK+ATAVA KAGKG I+VNG PI LVQP L+ K+ EPLL++G ++ +
Sbjct: 4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANI 63
Query: 183 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRWSR 335
DI++RV GGG SQ+YAIRQA+AK VAY+QKFVDEQSK ELK++F + R
Sbjct: 64 DIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDR 114
Score = 27.7 bits (60), Expect = 8.4
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 322 FVGPGARARYQKSYR 366
F G GARAR+QKSYR
Sbjct: 129 FGGRGARARFQKSYR 143
>sp|Q875N2|RS16_KLULA 40S ribosomal protein S16
Length = 143
Score = 139 bits (350), Expect = 2e-33
Identities = 69/111 (62%), Positives = 88/111 (79%)
Frame = +3
Query: 3 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 182
VPSVQ FG+KK+ATAVA KAGKG I+VNG PI LVQP L+ K+ EPLL++G ++ +
Sbjct: 4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANI 63
Query: 183 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRWSR 335
DI+++V GGG SQ+YAIRQA+AK VAY+QKFVDEQSK ELK++F + R
Sbjct: 64 DIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDR 114
>sp|Q6FR56|RS16_CANGA 40S ribosomal protein S16
Length = 143
Score = 139 bits (350), Expect = 2e-33
Identities = 69/111 (62%), Positives = 88/111 (79%)
Frame = +3
Query: 3 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 182
VPSVQ FG+KK+ATAVA KAGKG I+VNG PI LV+P L+ K+ EPLL++G ++ +
Sbjct: 4 VPSVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFANI 63
Query: 183 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRWSR 335
DI++RV GGG SQ+YAIRQA+AK VAY+QKFVDEQSK ELK++F + R
Sbjct: 64 DIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDR 114
Score = 28.1 bits (61), Expect = 6.4
Identities = 12/15 (80%), Positives = 13/15 (86%)
Frame = +1
Query: 322 FVGPGARARYQKSYR 366
F G GARAR+QKSYR
Sbjct: 129 FGGKGARARFQKSYR 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,904,180
Number of Sequences: 369166
Number of extensions: 681023
Number of successful extensions: 1995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1917
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)