Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_P15
(450 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 204 7e-53
sp|P62250|RS16_RAT 40S ribosomal protein S16 >gi|54039372|s... 204 1e-52
sp|Q22054|RS16_CAEEL 40S ribosomal protein S16 203 2e-52
sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 203 2e-52
sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 202 3e-52
sp|P62251|RS16_AEDAE 40S ribosomal protein S16 200 1e-51
sp|Q9W237|RS16_DROME 40S ribosomal protein S16 200 1e-51
sp|P46293|RS16_GOSHI 40S ribosomal protein S16 192 4e-49
sp|O22647|RS16_FRIAG 40S ribosomal protein S16 192 4e-49
sp|P46294|RS16_ORYSA 40S ribosomal protein S16 191 6e-49
>sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16
Length = 146
Score = 204 bits (519), Expect = 7e-53
Identities = 97/138 (70%), Positives = 120/138 (86%)
Frame = +1
Query: 10 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 189
SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDI 68
Query: 190 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 369
++RVKGGG +Q+YAIRQA++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVADPRRCE
Sbjct: 69 RVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Query: 370 AKKFGGPGARARYQKSYR 423
+KKFGGPGARARYQKSYR
Sbjct: 129 SKKFGGPGARARYQKSYR 146
>sp|P62250|RS16_RAT 40S ribosomal protein S16
sp|P14131|RS16_MOUSE 40S ribosomal protein S16
sp|Q29201|RS16_PIG 40S ribosomal protein S16
sp|P62249|RS16_HUMAN 40S ribosomal protein S16
Length = 146
Score = 204 bits (518), Expect = 1e-52
Identities = 97/138 (70%), Positives = 120/138 (86%)
Frame = +1
Query: 10 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 189
SVQVFGRKKTATAVA CK G G I+VNG P+E+++P LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDI 68
Query: 190 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 369
++RVKGGG +QIYAIRQ+++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVADPRRCE
Sbjct: 69 RVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Query: 370 AKKFGGPGARARYQKSYR 423
+KKFGGPGARARYQKSYR
Sbjct: 129 SKKFGGPGARARYQKSYR 146
>sp|Q22054|RS16_CAEEL 40S ribosomal protein S16
Length = 144
Score = 203 bits (516), Expect = 2e-52
Identities = 100/141 (70%), Positives = 119/141 (84%)
Frame = +1
Query: 1 SVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQ 180
+V SVQ FGRKKTATAVA CK G+G I+VNG P+E ++P L+ KLQEPLL++G+ER +
Sbjct: 4 TVQSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQD 63
Query: 181 LDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPR 360
+DI+IRV GGG +QIYA+RQALAK+ VAYY K+VDEQSKRELK F YD+SLLVADPR
Sbjct: 64 VDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPR 123
Query: 361 RCEAKKFGGPGARARYQKSYR 423
R E+KKFGGPGARARYQKSYR
Sbjct: 124 RRESKKFGGPGARARYQKSYR 144
>sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16
Length = 146
Score = 203 bits (516), Expect = 2e-52
Identities = 96/138 (69%), Positives = 120/138 (86%)
Frame = +1
Query: 10 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 189
SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDI 68
Query: 190 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 369
++RVKGGG +Q+YAIRQ+++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVADPRRCE
Sbjct: 69 RVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Query: 370 AKKFGGPGARARYQKSYR 423
+KKFGGPGARARYQKSYR
Sbjct: 129 SKKFGGPGARARYQKSYR 146
>sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16
Length = 151
Score = 202 bits (514), Expect = 3e-52
Identities = 94/140 (67%), Positives = 120/140 (85%)
Frame = +1
Query: 4 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 183
+ +VQVFGRKKTATAVA CK G G +RVNG P++LV+P LQ KLQEP+L+LG+E+ +
Sbjct: 12 IQAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGV 71
Query: 184 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 363
DI++ VKGGG +Q+YAIRQA++K+ +A+YQK+VDE SK+E+K+ ++YDRSLLVADPRR
Sbjct: 72 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRR 131
Query: 364 CEAKKFGGPGARARYQKSYR 423
CE KKFGGPGARARYQKSYR
Sbjct: 132 CEPKKFGGPGARARYQKSYR 151
>sp|P62251|RS16_AEDAE 40S ribosomal protein S16
Length = 148
Score = 200 bits (509), Expect = 1e-51
Identities = 96/140 (68%), Positives = 119/140 (85%)
Frame = +1
Query: 4 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 183
V +VQVFGRKKTATAVA CK GKG +RVNG P++ ++P LQ KLQEPLL+LG+E+ +
Sbjct: 9 VNAVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGV 68
Query: 184 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 363
DI+IRV GGG +QIYAIRQA++K+ V++YQK+VDE S++ELK+ +YDR+LLVADPRR
Sbjct: 69 DIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRR 128
Query: 364 CEAKKFGGPGARARYQKSYR 423
CE KKFGGPGARARYQKSYR
Sbjct: 129 CEPKKFGGPGARARYQKSYR 148
>sp|Q9W237|RS16_DROME 40S ribosomal protein S16
Length = 148
Score = 200 bits (508), Expect = 1e-51
Identities = 94/140 (67%), Positives = 118/140 (84%)
Frame = +1
Query: 4 VPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQL 183
V +VQVFGRKKTATAVA CK G G ++VNG P+E ++P LQ KLQEPLL+LG+E+ +
Sbjct: 9 VQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGV 68
Query: 184 DIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRR 363
DI++RV GGG +QIYAIRQA++K+ VA+YQK+VDE SK+E+K+ ++YDR+LLV DPRR
Sbjct: 69 DIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRR 128
Query: 364 CEAKKFGGPGARARYQKSYR 423
CE KKFGGPGARARYQKSYR
Sbjct: 129 CEPKKFGGPGARARYQKSYR 148
>sp|P46293|RS16_GOSHI 40S ribosomal protein S16
Length = 145
Score = 192 bits (487), Expect = 4e-49
Identities = 92/141 (65%), Positives = 116/141 (82%)
Frame = +1
Query: 1 SVPSVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQ 180
++ SVQ FGRKKTA AV CK G+G I++NG PIELV+P L+ K EP+L+LG +R
Sbjct: 5 AIESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTG 64
Query: 181 LDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPR 360
+D++IRVKGGG SQIYAIRQ++AK+ VA+YQK+VDEQSK+E+K+ + YDR+LLVADPR
Sbjct: 65 VDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPR 124
Query: 361 RCEAKKFGGPGARARYQKSYR 423
RCE KKFGG GARAR+QKSYR
Sbjct: 125 RCEPKKFGGRGARARFQKSYR 145
>sp|O22647|RS16_FRIAG 40S ribosomal protein S16
Length = 145
Score = 192 bits (487), Expect = 4e-49
Identities = 93/138 (67%), Positives = 115/138 (83%)
Frame = +1
Query: 10 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 189
SVQ FGRKKTA AV CK G+G I+VNG PIELV+P L+ K EP+L+LG R +D+
Sbjct: 8 SVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDM 67
Query: 190 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 369
+IRV+GGGK SQIYAIRQ++AK+ VAYYQK+VDEQ+K+E+K+ +RYDR+LLVADPRRCE
Sbjct: 68 RIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCE 127
Query: 370 AKKFGGPGARARYQKSYR 423
KKFGG GAR+R+QKSYR
Sbjct: 128 PKKFGGRGARSRFQKSYR 145
>sp|P46294|RS16_ORYSA 40S ribosomal protein S16
Length = 149
Score = 191 bits (485), Expect = 6e-49
Identities = 92/138 (66%), Positives = 113/138 (81%)
Frame = +1
Query: 10 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 189
+VQ FGRKK A AV+ CK G+G I+VNG PIEL++P L+ K EP+L+ G R K +D+
Sbjct: 12 TVQCFGRKKAAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDM 71
Query: 190 KIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 369
+IRV+GGGK SQIYAIRQA+AK+ VAYYQK+VDE SK+E+K+ F RYDR+LLVADPRRCE
Sbjct: 72 RIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCE 131
Query: 370 AKKFGGPGARARYQKSYR 423
KKFGG ARAR+QKSYR
Sbjct: 132 PKKFGGRRARARFQKSYR 149
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,467,814
Number of Sequences: 369166
Number of extensions: 817570
Number of successful extensions: 2382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2247
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)