Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_M21
(446 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22054|RS16_CAEEL 40S ribosomal protein S16 203 2e-52
sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 202 3e-52
sp|P62250|RS16_RAT 40S ribosomal protein S16 >gi|54039372|s... 202 4e-52
sp|P62251|RS16_AEDAE 40S ribosomal protein S16 201 6e-52
sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 201 6e-52
sp|Q9W237|RS16_DROME 40S ribosomal protein S16 200 1e-51
sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 199 2e-51
sp|O22647|RS16_FRIAG 40S ribosomal protein S16 191 8e-49
sp|P46294|RS16_ORYSA 40S ribosomal protein S16 190 1e-48
sp|Q42340|RS16_ARATH 40S ribosomal protein S16 189 2e-48
>sp|Q22054|RS16_CAEEL 40S ribosomal protein S16
Length = 144
Score = 203 bits (516), Expect = 2e-52
Identities = 100/138 (72%), Positives = 118/138 (85%)
Frame = +3
Query: 6 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 185
SVQ FGRKKTATAVA CK G+G I+VNG P+E ++P L+ KLQEPLL++G+ER + +DI
Sbjct: 7 SVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDI 66
Query: 186 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 365
+IRVSGGG +QIYA+RQALAK+ VAYY K+VDEQSKRELK F YD+SLLVADPRR E
Sbjct: 67 RIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLLVADPRRRE 126
Query: 366 AKKFGGPGARARYQKSYR 419
+KKFGGPGARARYQKSYR
Sbjct: 127 SKKFGGPGARARYQKSYR 144
>sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16
Length = 146
Score = 202 bits (514), Expect = 3e-52
Identities = 96/138 (69%), Positives = 119/138 (86%)
Frame = +3
Query: 6 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 185
SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDI 68
Query: 186 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 365
++RV GGG +Q+YAIRQA++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVADPRRCE
Sbjct: 69 RVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Query: 366 AKKFGGPGARARYQKSYR 419
+KKFGGPGARARYQKSYR
Sbjct: 129 SKKFGGPGARARYQKSYR 146
>sp|P62250|RS16_RAT 40S ribosomal protein S16
sp|P14131|RS16_MOUSE 40S ribosomal protein S16
sp|Q29201|RS16_PIG 40S ribosomal protein S16
sp|P62249|RS16_HUMAN 40S ribosomal protein S16
Length = 146
Score = 202 bits (513), Expect = 4e-52
Identities = 96/138 (69%), Positives = 119/138 (86%)
Frame = +3
Query: 6 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 185
SVQVFGRKKTATAVA CK G G I+VNG P+E+++P LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDI 68
Query: 186 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 365
++RV GGG +QIYAIRQ+++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVADPRRCE
Sbjct: 69 RVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Query: 366 AKKFGGPGARARYQKSYR 419
+KKFGGPGARARYQKSYR
Sbjct: 129 SKKFGGPGARARYQKSYR 146
>sp|P62251|RS16_AEDAE 40S ribosomal protein S16
Length = 148
Score = 201 bits (511), Expect = 6e-52
Identities = 96/138 (69%), Positives = 119/138 (86%)
Frame = +3
Query: 6 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 185
+VQVFGRKKTATAVA CK GKG +RVNG P++ ++P LQ KLQEPLL+LG+E+ +DI
Sbjct: 11 AVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGVDI 70
Query: 186 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 365
+IRVSGGG +QIYAIRQA++K+ V++YQK+VDE S++ELK+ +YDR+LLVADPRRCE
Sbjct: 71 RIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLLVADPRRCE 130
Query: 366 AKKFGGPGARARYQKSYR 419
KKFGGPGARARYQKSYR
Sbjct: 131 PKKFGGPGARARYQKSYR 148
>sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16
Length = 146
Score = 201 bits (511), Expect = 6e-52
Identities = 95/138 (68%), Positives = 119/138 (86%)
Frame = +3
Query: 6 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 185
SVQVFGRKKTATAVA CK G G I+VNG P+E ++P+ LQ KL EP+L+LG+ER +DI
Sbjct: 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDI 68
Query: 186 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 365
++RV GGG +Q+YAIRQ+++K+ VAYYQK+VDE SK+E+K+ I+YDR+LLVADPRRCE
Sbjct: 69 RVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCE 128
Query: 366 AKKFGGPGARARYQKSYR 419
+KKFGGPGARARYQKSYR
Sbjct: 129 SKKFGGPGARARYQKSYR 146
>sp|Q9W237|RS16_DROME 40S ribosomal protein S16
Length = 148
Score = 200 bits (509), Expect = 1e-51
Identities = 94/138 (68%), Positives = 118/138 (85%)
Frame = +3
Query: 6 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 185
+VQVFGRKKTATAVA CK G G ++VNG P+E ++P LQ KLQEPLL+LG+E+ +DI
Sbjct: 11 AVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDI 70
Query: 186 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 365
++RVSGGG +QIYAIRQA++K+ VA+YQK+VDE SK+E+K+ ++YDR+LLV DPRRCE
Sbjct: 71 RVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVGDPRRCE 130
Query: 366 AKKFGGPGARARYQKSYR 419
KKFGGPGARARYQKSYR
Sbjct: 131 PKKFGGPGARARYQKSYR 148
>sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16
Length = 151
Score = 199 bits (507), Expect = 2e-51
Identities = 93/138 (67%), Positives = 118/138 (85%)
Frame = +3
Query: 6 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 185
+VQVFGRKKTATAVA CK G G +RVNG P++LV+P LQ KLQEP+L+LG+E+ +DI
Sbjct: 14 AVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDI 73
Query: 186 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 365
++ V GGG +Q+YAIRQA++K+ +A+YQK+VDE SK+E+K+ ++YDRSLLVADPRRCE
Sbjct: 74 RVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCE 133
Query: 366 AKKFGGPGARARYQKSYR 419
KKFGGPGARARYQKSYR
Sbjct: 134 PKKFGGPGARARYQKSYR 151
>sp|O22647|RS16_FRIAG 40S ribosomal protein S16
Length = 145
Score = 191 bits (484), Expect = 8e-49
Identities = 93/138 (67%), Positives = 114/138 (82%)
Frame = +3
Query: 6 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 185
SVQ FGRKKTA AV CK G+G I+VNG PIELV+P L+ K EP+L+LG R +D+
Sbjct: 8 SVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDM 67
Query: 186 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 365
+IRV GGGK SQIYAIRQ++AK+ VAYYQK+VDEQ+K+E+K+ +RYDR+LLVADPRRCE
Sbjct: 68 RIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCE 127
Query: 366 AKKFGGPGARARYQKSYR 419
KKFGG GAR+R+QKSYR
Sbjct: 128 PKKFGGRGARSRFQKSYR 145
>sp|P46294|RS16_ORYSA 40S ribosomal protein S16
Length = 149
Score = 190 bits (482), Expect = 1e-48
Identities = 92/138 (66%), Positives = 112/138 (81%)
Frame = +3
Query: 6 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 185
+VQ FGRKK A AV+ CK G+G I+VNG PIEL++P L+ K EP+L+ G R K +D+
Sbjct: 12 TVQCFGRKKAAVAVSYCKPGRGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDM 71
Query: 186 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 365
+IRV GGGK SQIYAIRQA+AK+ VAYYQK+VDE SK+E+K+ F RYDR+LLVADPRRCE
Sbjct: 72 RIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCE 131
Query: 366 AKKFGGPGARARYQKSYR 419
KKFGG ARAR+QKSYR
Sbjct: 132 PKKFGGRRARARFQKSYR 149
>sp|Q42340|RS16_ARATH 40S ribosomal protein S16
Length = 146
Score = 189 bits (480), Expect = 2e-48
Identities = 91/138 (65%), Positives = 114/138 (82%)
Frame = +3
Query: 6 SVQVFGRKKTATAVALCKAGKGNIRVNGHPIELVQPSPLQAKLQEPLLILGEERLKQLDI 185
SVQ FGRKKTA AV CK G G I++NG PIEL QP L+ K+ EP+L+LG+ R +++
Sbjct: 9 SVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNM 68
Query: 186 KIRVSGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKRELKESFIRYDRSLLVADPRRCE 365
+IRV+GGG SQ+YAIRQ++AK+ VAYYQK+VDEQSK+E+K+ +RYDR+LLVADPRRCE
Sbjct: 69 RIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCE 128
Query: 366 AKKFGGPGARARYQKSYR 419
KKFGG GAR+RYQKSYR
Sbjct: 129 PKKFGGRGARSRYQKSYR 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,394,961
Number of Sequences: 369166
Number of extensions: 762432
Number of successful extensions: 2306
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2171
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2394311040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)