Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_J20
(332 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q22054|RS16_CAEEL 40S ribosomal protein S16 152 3e-37
sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16 152 3e-37
sp|P62250|RS16_RAT 40S ribosomal protein S16 >gi|54039372|s... 151 5e-37
sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16 150 7e-37
sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16 150 1e-36
sp|Q9W237|RS16_DROME 40S ribosomal protein S16 149 3e-36
sp|P62251|RS16_AEDAE 40S ribosomal protein S16 147 6e-36
sp|P46294|RS16_ORYSA 40S ribosomal protein S16 145 4e-35
sp|P16149|RS16_LUPPO 40S ribosomal protein S16 144 5e-35
sp|Q42340|RS16_ARATH 40S ribosomal protein S16 143 1e-34
>sp|Q22054|RS16_CAEEL 40S ribosomal protein S16
Length = 144
Score = 152 bits (383), Expect = 3e-37
Identities = 74/100 (74%), Positives = 87/100 (87%)
Frame = +2
Query: 8 LQAKLQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKR 187
L+ KLQEPLL++G+ER + +DI+IRV GGG +QIYA+RQALAK+ VAYY K+VDEQSKR
Sbjct: 45 LRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKR 104
Query: 188 ELKESFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 307
ELK F YD+SLLVADPRR E+KKFGGPGARARYQKSYR
Sbjct: 105 ELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144
>sp|Q98TR7|RS16_HETFO 40S ribosomal protein S16
Length = 146
Score = 152 bits (383), Expect = 3e-37
Identities = 71/100 (71%), Positives = 89/100 (89%)
Frame = +2
Query: 8 LQAKLQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKR 187
LQ KL EP+L+LG+ER +DI++RVKGGG +Q+YAIRQA++K+ VAYYQK+VDE SK+
Sbjct: 47 LQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKK 106
Query: 188 ELKESFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 307
E+K+ I+YDR+LLVADPRRCE+KKFGGPGARARYQKSYR
Sbjct: 107 EIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>sp|P62250|RS16_RAT 40S ribosomal protein S16
sp|P14131|RS16_MOUSE 40S ribosomal protein S16
sp|Q29201|RS16_PIG 40S ribosomal protein S16
sp|P62249|RS16_HUMAN 40S ribosomal protein S16
Length = 146
Score = 151 bits (381), Expect = 5e-37
Identities = 71/100 (71%), Positives = 89/100 (89%)
Frame = +2
Query: 8 LQAKLQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKR 187
LQ KL EP+L+LG+ER +DI++RVKGGG +QIYAIRQ+++K+ VAYYQK+VDE SK+
Sbjct: 47 LQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKK 106
Query: 188 ELKESFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 307
E+K+ I+YDR+LLVADPRRCE+KKFGGPGARARYQKSYR
Sbjct: 107 EIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>sp|Q90YQ7|RS16_ICTPU 40S ribosomal protein S16
Length = 146
Score = 150 bits (380), Expect = 7e-37
Identities = 70/100 (70%), Positives = 89/100 (89%)
Frame = +2
Query: 8 LQAKLQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKR 187
LQ KL EP+L+LG+ER +DI++RVKGGG +Q+YAIRQ+++K+ VAYYQK+VDE SK+
Sbjct: 47 LQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKK 106
Query: 188 ELKESFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 307
E+K+ I+YDR+LLVADPRRCE+KKFGGPGARARYQKSYR
Sbjct: 107 EIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146
>sp|Q95V31|RS16_SPOFR 40S ribosomal protein S16
Length = 151
Score = 150 bits (378), Expect = 1e-36
Identities = 68/100 (68%), Positives = 88/100 (88%)
Frame = +2
Query: 8 LQAKLQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKR 187
LQ KLQEP+L+LG+E+ +DI++ VKGGG +Q+YAIRQA++K+ +A+YQK+VDE SK+
Sbjct: 52 LQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKK 111
Query: 188 ELKESFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 307
E+K+ ++YDRSLLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 112 EIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 151
>sp|Q9W237|RS16_DROME 40S ribosomal protein S16
Length = 148
Score = 149 bits (375), Expect = 3e-36
Identities = 69/100 (69%), Positives = 87/100 (87%)
Frame = +2
Query: 8 LQAKLQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKR 187
LQ KLQEPLL+LG+E+ +DI++RV GGG +QIYAIRQA++K+ VA+YQK+VDE SK+
Sbjct: 49 LQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKK 108
Query: 188 ELKESFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 307
E+K+ ++YDR+LLV DPRRCE KKFGGPGARARYQKSYR
Sbjct: 109 EIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYR 148
>sp|P62251|RS16_AEDAE 40S ribosomal protein S16
Length = 148
Score = 147 bits (372), Expect = 6e-36
Identities = 70/100 (70%), Positives = 87/100 (87%)
Frame = +2
Query: 8 LQAKLQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKR 187
LQ KLQEPLL+LG+E+ +DI+IRV GGG +QIYAIRQA++K+ V++YQK+VDE S++
Sbjct: 49 LQYKLQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRK 108
Query: 188 ELKESFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 307
ELK+ +YDR+LLVADPRRCE KKFGGPGARARYQKSYR
Sbjct: 109 ELKDILTQYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 148
>sp|P46294|RS16_ORYSA 40S ribosomal protein S16
Length = 149
Score = 145 bits (365), Expect = 4e-35
Identities = 69/100 (69%), Positives = 84/100 (84%)
Frame = +2
Query: 8 LQAKLQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKR 187
L+ K EP+L+ G R K +D++IRV+GGGK SQIYAIRQA+AK+ VAYYQK+VDE SK+
Sbjct: 50 LRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKK 109
Query: 188 ELKESFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 307
E+K+ F RYDR+LLVADPRRCE KKFGG ARAR+QKSYR
Sbjct: 110 EVKDIFARYDRTLLVADPRRCEPKKFGGRRARARFQKSYR 149
>sp|P16149|RS16_LUPPO 40S ribosomal protein S16
Length = 145
Score = 144 bits (364), Expect = 5e-35
Identities = 68/100 (68%), Positives = 86/100 (86%)
Frame = +2
Query: 8 LQAKLQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKR 187
L+ K EP+L+LG+ R +D++IRVKGGG SQIYAIRQ++AK+ VA+YQK+VDEQSK+
Sbjct: 46 LRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKK 105
Query: 188 ELKESFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 307
E+K+ +RYDR+LLVADPRRCE KKFGG GARAR+QKSYR
Sbjct: 106 EIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145
>sp|Q42340|RS16_ARATH 40S ribosomal protein S16
Length = 146
Score = 143 bits (360), Expect = 1e-34
Identities = 66/100 (66%), Positives = 86/100 (86%)
Frame = +2
Query: 8 LQAKLQEPLLILGEERLKQLDIKIRVKGGGKNSQIYAIRQALAKSCVAYYQKFVDEQSKR 187
L+ K+ EP+L+LG+ R ++++IRV GGG SQ+YAIRQ++AK+ VAYYQK+VDEQSK+
Sbjct: 47 LRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKK 106
Query: 188 ELKESFIRYDRSLLVADPRRCEAKKFGGPGARARYQKSYR 307
E+K+ +RYDR+LLVADPRRCE KKFGG GAR+RYQKSYR
Sbjct: 107 EIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,906,286
Number of Sequences: 369166
Number of extensions: 582541
Number of successful extensions: 1711
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1667
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)