Planaria EST Database

DrC_01056

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01056
         (1105 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53597|SUCA_HUMAN  Succinyl-CoA ligase [GDP-forming] alph...   407   e-113
sp|Q9WUM5|SUCA_MOUSE  Succinyl-CoA ligase [GDP-forming] alph...   398   e-110
sp|P13086|SUCA_RAT  Succinyl-CoA ligase [GDP-forming] alpha-...   397   e-110
sp|Q94522|SUCA_DROME  Succinyl-CoA ligase [GDP-forming] alph...   372   e-103
sp|P36967|SUCA_DICDI  Succinyl-CoA ligase [GDP-forming] alph...   372   e-102
sp|P53596|SUCA_CAEEL  Probable succinyl-CoA ligase [GDP-form...   360   5e-99
sp|O19069|SUCA_PIG  Succinyl-CoA ligase [GDP-forming] alpha-...   354   3e-97
sp|Q8LAD2|SUCA2_ARATH  Succinyl-CoA ligase [GDP-forming] alp...   340   4e-93
sp|P68209|SUCA1_ARATH  Succinyl-CoA ligase [GDP-forming] alp...   340   4e-93
sp|O08371|SUCD_RICPR  Succinyl-CoA synthetase alpha chain (S...   330   4e-90

>sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
           precursor (Succinyl-CoA synthetase, alpha chain)
           (SCS-alpha)
          Length = 333

 Score =  407 bits (1047), Expect = e-113
 Identities = 198/305 (64%), Positives = 236/305 (77%), Gaps = 1/305 (0%)
 Frame = +3

Query: 21  VRTC-YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLD 197
           +R C Y  SR HL + + TK+ICQG TGKQGTFH++QA++YGT  VGG +PGKGGQTHL 
Sbjct: 25  IRHCSYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLG 84

Query: 198 LPVFNTVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKN 377
           LPVFNTVKEAKE T   ASVI+VPPP AAA+I EAI+AEIPLVVCITEGIPQQDMVRVK+
Sbjct: 85  LPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKH 144

Query: 378 RLINQEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVG 557
           +L+ QEKTRLIGPNCPG+I P +CKIGIMP HIHK G+IGIVSRSGTLTYEAVHQT+QVG
Sbjct: 145 KLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVG 204

Query: 558 LGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGP 737
           LGQSL +GIGGDPFNGT+F+DCLE+F+ D  T+                  +L++HN+GP
Sbjct: 205 LGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGP 264

Query: 738 NRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMI 917
           N K VVSFIAGLTAPPGRRM              +EKI AL+ AGV+V++SPAQ+G ++ 
Sbjct: 265 NSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIY 324

Query: 918 EALHK 932
           +   K
Sbjct: 325 KEFEK 329

>sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
           precursor (Succinyl-CoA synthetase, alpha chain)
           (SCS-alpha)
          Length = 333

 Score =  398 bits (1022), Expect = e-110
 Identities = 195/300 (65%), Positives = 228/300 (76%)
 Frame = +3

Query: 33  YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFN 212
           Y  SR H+ I + TK+ICQG TGKQGTFH++QA++YGT  VGG +PGKGGQ HL LPVFN
Sbjct: 30  YTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFN 89

Query: 213 TVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQ 392
           TVKEAKE T   ASVI+VPPP AAA+I EAIDAEIPLVVCITEGIPQQDMVRVK+RL  Q
Sbjct: 90  TVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQ 149

Query: 393 EKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSL 572
             TRLIGPNCPG+I P +CKIGIMP HIHK G+IGIVSRSGTLTYEAVHQT+QVGLGQSL
Sbjct: 150 GTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 209

Query: 573 VIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAV 752
            IGIGGDPFNGT+F+DCLEVF+ D  T+                  +L++HN+GP  K V
Sbjct: 210 CIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPV 269

Query: 753 VSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEALHK 932
           VSFIAG+TAPPGRRM              +EKI AL+ AGV+V++SPAQ+G ++ +   K
Sbjct: 270 VSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEK 329

>sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
           precursor (Succinyl-CoA synthetase, alpha chain)
           (SCS-alpha)
          Length = 333

 Score =  397 bits (1019), Expect = e-110
 Identities = 196/300 (65%), Positives = 229/300 (76%)
 Frame = +3

Query: 33  YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFN 212
           Y  SR ++ I + TKVICQG TGKQGTFH++QA++YGT  VGG +PGKGG+ HL LPVFN
Sbjct: 30  YTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFN 89

Query: 213 TVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQ 392
           TVKEAKE T   ASVI+VPPP AAA+I EAIDAEIPLVVCITEGIPQQDM+RVK++L  Q
Sbjct: 90  TVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMLRVKHKLTRQ 149

Query: 393 EKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSL 572
            KTRLIGPNCPGII P +CKIGIMP HIHK G+IGIVSRSGTLTYEAVHQT+QVGLGQSL
Sbjct: 150 GKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 209

Query: 573 VIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAV 752
            IGIGGDPFNGTNF+DCL+VF++D  T+                  +L++HN+GP  K V
Sbjct: 210 CIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPV 269

Query: 753 VSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEALHK 932
           VSFIAG+TAPPGRRM              +EKI AL+ AGVIV++SPAQ+G  M +   K
Sbjct: 270 VSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEFEK 329

>sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
           precursor (Succinyl-CoA synthetase, alpha chain)
           (SCS-alpha)
          Length = 328

 Score =  372 bits (956), Expect = e-103
 Identities = 180/301 (59%), Positives = 230/301 (76%)
 Frame = +3

Query: 33  YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFN 212
           Y+++R +L ++  ++VICQG TGKQGTFH++QA++YGT  VGG+SP KGG  HL LPVF 
Sbjct: 25  YNKTRGNLKLNGDSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFA 84

Query: 213 TVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQ 392
           +V EAK+AT+P A+VI+VPPP AAA+I+EA++AEIPL+VCITEG+PQ DMV+VK+ LI+Q
Sbjct: 85  SVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQ 144

Query: 393 EKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSL 572
            K+RL+GPNCPGII P QCKIGIMP HIHK GKIG+VSRSGTLTYEAVHQT++VGLGQ+L
Sbjct: 145 SKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQTL 204

Query: 573 VIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAV 752
            +GIGGDPFNGT+F+DCLEVF++D  TK                  YL ++N+G   K V
Sbjct: 205 CVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKAADYLTEYNSGIKAKPV 264

Query: 753 VSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEALHK 932
           VSFIAG++APPGRRM               +KI AL+ AGVIVT SPA+MG  + + + +
Sbjct: 265 VSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAALEKAGVIVTRSPAKMGHELFKEMKR 324

Query: 933 L 935
           L
Sbjct: 325 L 325

>sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
           precursor (Succinyl-CoA synthetase, alpha chain)
           (SCS-alpha)
          Length = 310

 Score =  372 bits (954), Expect = e-102
 Identities = 189/295 (64%), Positives = 220/295 (74%)
 Frame = +3

Query: 33  YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFN 212
           +  ++P + I++ TKVICQG TG QGTFH+KQAI+YGT+ VGGVSPGKGGQ HLDLP FN
Sbjct: 15  FFSTKPSVLINKNTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLDLPAFN 74

Query: 213 TVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQ 392
           TVKEAKEAT  +A+VI+VPPP AAA+I EAIDAE+ LVVCITEGIPQQDMV+VK  L  Q
Sbjct: 75  TVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQ 134

Query: 393 EKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSL 572
            KTRLIGPNCPGIIKP +CKIGIMP HIHKPGKIGIVSRSGTLTYEAV QT+ VGLGQS 
Sbjct: 135 NKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQST 194

Query: 573 VIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAV 752
            IGIGGDPFNGTNF+DCL++F +D  T+                  +L  +   P  K V
Sbjct: 195 CIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDN---PTDKPV 251

Query: 753 VSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMI 917
           VSFIAGL+APPGRRM                KI+ALK AGV VT SPA++G +++
Sbjct: 252 VSFIAGLSAPPGRRMGHAGAIISGGKGDANSKIEALKAAGVTVTFSPAKLGETIL 306

>sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-forming] alpha-chain,
           mitochondrial precursor (Succinyl-CoA synthetase, alpha
           chain) (SCS-alpha)
          Length = 322

 Score =  360 bits (923), Expect = 5e-99
 Identities = 181/297 (60%), Positives = 213/297 (71%)
 Frame = +3

Query: 33  YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFN 212
           Y+ +  +L I++ TKVI QG TGKQGTFH KQ ++Y T  VGGV+  K G  HL LPVF 
Sbjct: 21  YNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFK 80

Query: 213 TVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQ 392
            V EA+  T  DASVI+VP   A ++I EA+DAEIPLVVCITEGIPQ DMVRVK+RL+ Q
Sbjct: 81  NVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQ 140

Query: 393 EKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSL 572
            KTRL+GPNCPGII  +QCKIGIMP HIHK G IGIVSRSGTLTYEAVHQT+QVG GQ+L
Sbjct: 141 NKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTL 200

Query: 573 VIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAV 752
            +GIGGDPFNGTNF+DCL VF+ D  TK                  YL++HN+G NRK V
Sbjct: 201 CVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIGEIGGSAEEEAAAYLKEHNSGANRKPV 260

Query: 753 VSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEA 923
           VSFIAG+TAPPGRRM               +KI+AL+ AGV+VT SPA++G SM  A
Sbjct: 261 VSFIAGVTAPPGRRMGHAGAIISGGKGTAADKINALREAGVVVTDSPAKLGTSMATA 317

>sp|O19069|SUCA_PIG Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
           precursor (Succinyl-CoA synthetase, alpha chain)
           (SCS-alpha)
          Length = 350

 Score =  354 bits (908), Expect = 3e-97
 Identities = 187/326 (57%), Positives = 226/326 (69%), Gaps = 22/326 (6%)
 Frame = +3

Query: 21  VRTC-YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLD 197
           +R C Y  SR HL + + TKVICQG TGKQGTFH++QA++YGT+ VGG +PGKGG+THL 
Sbjct: 25  IRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLG 84

Query: 198 LPVFNTVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKN 377
           LPVFNTVKEAKE T   ASVI+VPPP AAA+I EAIDAE+PLVVCITEGIPQQDMVRVK+
Sbjct: 85  LPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKH 144

Query: 378 RLINQEKTRLIGPNCPGII-------------------KPNQCKIGIM--PAHIHKPGKI 494
           RL+ Q KTRLIGPNCPG+I                   +    KI ++     IH    +
Sbjct: 145 RLLRQGKTRLIGPNCPGVINRFLRFAVYITSRVFTCTQQEEYRKIPLLFGTRSIH----M 200

Query: 495 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 674
           GIVSRSGTLTYEAVHQT+QVGLGQSL +GIGGDPFNGT+F DCLE+F+ D  T+      
Sbjct: 201 GIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIG 260

Query: 675 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 854
                       +L++HN+GP  K VVSFIAGLTAPPGRRM              +EKI 
Sbjct: 261 EIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIT 320

Query: 855 ALKHAGVIVTLSPAQMGASMIEALHK 932
           AL+ AGV+V++SPAQ+G ++ +   K
Sbjct: 321 ALQSAGVVVSMSPAQLGTTIYKEFEK 346

>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 2, mitochondrial
           precursor (Succinyl-CoA synthetase 2, alpha chain)
           (SCS2-alpha)
          Length = 341

 Score =  340 bits (872), Expect = 4e-93
 Identities = 175/287 (60%), Positives = 205/287 (71%)
 Frame = +3

Query: 60  ISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFNTVKEAKEAT 239
           + + T+VICQG+TGK GTFHT+QAI+YGT  V GV+P KGG  HL LPVFNTV EAK  T
Sbjct: 49  VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAET 108

Query: 240 NPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQEKTRLIGPN 419
             +ASVI+VP P AAA+IME + AE+ L+VCITEGIPQ DMVRVK  L +Q KTRLIGPN
Sbjct: 109 KANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPN 168

Query: 420 CPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPF 599
           CPGIIKP +CKIGIMP +IHKPGKIGIVSRSGTLTYEAV QT+ VGLGQS  +GIGGDPF
Sbjct: 169 CPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPF 228

Query: 600 NGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTA 779
           NGTNFVDCLE F  D  T+                   ++++      K VV+FIAGLTA
Sbjct: 229 NGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTD---KPVVAFIAGLTA 285

Query: 780 PPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIE 920
           PPGRRM              Q+KI +L+ AGV V  SPA++GA+M E
Sbjct: 286 PPGRRMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFE 332

>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 1, mitochondrial
           precursor (Succinyl-CoA synthetase 1, alpha chain)
           (SCS1-alpha)
          Length = 347

 Score =  340 bits (872), Expect = 4e-93
 Identities = 179/308 (58%), Positives = 213/308 (69%), Gaps = 4/308 (1%)
 Frame = +3

Query: 9   LKSFVRTCYHRSRPH----LSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGK 176
           L S  ++    S PH    + + + T+V+CQG+TGK GTFHT+QAI+YGT  V GV+P K
Sbjct: 33  LTSLTQSRSFASDPHPPAAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKK 92

Query: 177 GGQTHLDLPVFNTVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQ 356
           GG  HL LPVFN+V EAK  T  +ASVI+VP P AAA+IME I+AE+ L+VCITEGIPQ 
Sbjct: 93  GGTEHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQH 152

Query: 357 DMVRVKNRLINQEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAV 536
           DMVRVK+ L +Q KTRLIGPNCPGIIKP +CKIGIMP +IHKPGKIGIVSRSGTLTYEAV
Sbjct: 153 DMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAV 212

Query: 537 HQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYL 716
            QT+ VGLGQS  +GIGGDPFNGTNFVDCLE F  D  T+                   +
Sbjct: 213 FQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALI 272

Query: 717 EKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPA 896
           +   A    K VV+FIAGLTAPPGRRM              Q+KI +L  AGV V  SPA
Sbjct: 273 K---ASGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLNDAGVKVVESPA 329

Query: 897 QMGASMIE 920
           ++G++M E
Sbjct: 330 KIGSAMYE 337

>sp|O08371|SUCD_RICPR Succinyl-CoA synthetase alpha chain (SCS-alpha)
          Length = 292

 Score =  330 bits (846), Expect = 4e-90
 Identities = 166/292 (56%), Positives = 211/292 (72%)
 Frame = +3

Query: 60  ISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFNTVKEAKEAT 239
           I++ TKVICQG TG QGTFH++QAI YGT+ VGGV+PGKGG THL+LPV+NTV EAK  T
Sbjct: 5   INKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLNLPVYNTVHEAKAKT 64

Query: 240 NPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQEKTRLIGPN 419
             +ASVI+VPP  AA SI+EAIDA+I +VVCITEGIP  DM++VK  LI   KTRLIGPN
Sbjct: 65  GANASVIYVPPGFAADSILEAIDAKIEVVVCITEGIPVLDMIKVKRALIG-SKTRLIGPN 123

Query: 420 CPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPF 599
           CPG+I P +CKIGIMP HIHK G IGIVSRSGTLTYEAV QT+  GLGQS  +GIGGDP 
Sbjct: 124 CPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGGDPV 183

Query: 600 NGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTA 779
           NGT+FVDC+E+F++D+ TK                  ++++      +K +VSFIAG+TA
Sbjct: 184 NGTSFVDCIEMFLQDDETKAIIMIGEIGGSAEEDAADFIKQSKI---KKPIVSFIAGITA 240

Query: 780 PPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEALHKL 935
           P  +RM              ++K++ L+ AGVI+T SPA +G +M++ L+K+
Sbjct: 241 PADKRMGHAGAIISGGKGSAEDKVEVLQSAGVIITRSPADIGKTMLDLLNKI 292

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,397,925
Number of Sequences: 369166
Number of extensions: 2553396
Number of successful extensions: 6224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6153
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12154488300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01056

  1. Dr_sW_023_P06
  2. Dr_sW_026_J23
  3. Dr_sW_002_M15
  4. Dr_sW_018_O08
  5. Dr_sW_021_N04
  6. Dr_sW_019_C03
  7. Dr_sW_013_P14