Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_P14
(694 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alph... 227 3e-59
sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-... 224 1e-58
sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-form... 219 4e-57
sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alph... 219 4e-57
sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alph... 213 5e-55
sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alph... 201 2e-51
sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alp... 195 8e-50
sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alp... 193 3e-49
sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [GDP-form... 189 8e-48
sp|O08371|SUCD_RICPR Succinyl-CoA synthetase alpha chain (S... 184 1e-46
>sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 227 bits (578), Expect = 3e-59
Identities = 109/181 (60%), Positives = 132/181 (72%)
Frame = +3
Query: 3 QEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQS 182
QEKTRLIGPNCPG+I P +CKIGIMP HIHK G+IGIVSRSGTLTYEAVHQT+QVGLGQS
Sbjct: 149 QEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQS 208
Query: 183 LVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKA 362
L +GIGGDPFNGT+F+DCLE+F+ D T+ +L++HN+GPN K
Sbjct: 209 LCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKP 268
Query: 363 VVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEALH 542
VVSFIAGLTAPPGRRM +EKI AL+ AGV+V++SPAQ+G ++ +
Sbjct: 269 VVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFE 328
Query: 543 K 545
K
Sbjct: 329 K 329
>sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 224 bits (572), Expect = 1e-58
Identities = 111/181 (61%), Positives = 130/181 (71%)
Frame = +3
Query: 3 QEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQS 182
Q KTRLIGPNCPGII P +CKIGIMP HIHK G+IGIVSRSGTLTYEAVHQT+QVGLGQS
Sbjct: 149 QGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQS 208
Query: 183 LVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKA 362
L IGIGGDPFNGTNF+DCL+VF++D T+ +L++HN+GP K
Sbjct: 209 LCIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKP 268
Query: 363 VVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEALH 542
VVSFIAG+TAPPGRRM +EKI AL+ AGVIV++SPAQ+G M +
Sbjct: 269 VVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEFE 328
Query: 543 K 545
K
Sbjct: 329 K 329
>sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor (Succinyl-CoA synthetase, alpha
chain) (SCS-alpha)
Length = 322
Score = 219 bits (559), Expect = 4e-57
Identities = 109/178 (61%), Positives = 126/178 (70%)
Frame = +3
Query: 3 QEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQS 182
Q KTRL+GPNCPGII +QCKIGIMP HIHK G IGIVSRSGTLTYEAVHQT+QVG GQ+
Sbjct: 140 QNKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQT 199
Query: 183 LVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKA 362
L +GIGGDPFNGTNF+DCL VF+ D TK YL++HN+G NRK
Sbjct: 200 LCVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIGEIGGSAEEEAAAYLKEHNSGANRKP 259
Query: 363 VVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEA 536
VVSFIAG+TAPPGRRM +KI+AL+ AGV+VT SPA++G SM A
Sbjct: 260 VVSFIAGVTAPPGRRMGHAGAIISGGKGTAADKINALREAGVVVTDSPAKLGTSMATA 317
>sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 219 bits (559), Expect = 4e-57
Identities = 107/181 (59%), Positives = 129/181 (71%)
Frame = +3
Query: 3 QEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQS 182
Q TRLIGPNCPG+I P +CKIGIMP HIHK G+IGIVSRSGTLTYEAVHQT+QVGLGQS
Sbjct: 149 QGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQS 208
Query: 183 LVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKA 362
L IGIGGDPFNGT+F+DCLEVF+ D T+ +L++HN+GP K
Sbjct: 209 LCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKP 268
Query: 363 VVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEALH 542
VVSFIAG+TAPPGRRM +EKI AL+ AGV+V++SPAQ+G ++ +
Sbjct: 269 VVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFE 328
Query: 543 K 545
K
Sbjct: 329 K 329
>sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 328
Score = 213 bits (541), Expect = 5e-55
Identities = 105/182 (57%), Positives = 128/182 (70%)
Frame = +3
Query: 3 QEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQS 182
Q K+RL+GPNCPGII P QCKIGIMP HIHK GKIG+VSRSGTLTYEAVHQT++VGLGQ+
Sbjct: 144 QSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQT 203
Query: 183 LVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKA 362
L +GIGGDPFNGT+F+DCLEVF++D TK YL ++N+G K
Sbjct: 204 LCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKAADYLTEYNSGIKAKP 263
Query: 363 VVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEALH 542
VVSFIAG++APPGRRM +KI AL+ AGVIVT SPA+MG + + +
Sbjct: 264 VVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAALEKAGVIVTRSPAKMGHELFKEMK 323
Query: 543 KL 548
+L
Sbjct: 324 RL 325
>sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 310
Score = 201 bits (510), Expect = 2e-51
Identities = 104/176 (59%), Positives = 120/176 (68%)
Frame = +3
Query: 3 QEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQS 182
Q KTRLIGPNCPGIIKP +CKIGIMP HIHKPGKIGIVSRSGTLTYEAV QT+ VGLGQS
Sbjct: 134 QNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQS 193
Query: 183 LVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKA 362
IGIGGDPFNGTNF+DCL++F +D T+ +L + P K
Sbjct: 194 TCIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDN---PTDKP 250
Query: 363 VVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMI 530
VVSFIAGL+APPGRRM KI+ALK AGV VT SPA++G +++
Sbjct: 251 VVSFIAGLSAPPGRRMGHAGAIISGGKGDANSKIEALKAAGVTVTFSPAKLGETIL 306
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 2, mitochondrial
precursor (Succinyl-CoA synthetase 2, alpha chain)
(SCS2-alpha)
Length = 341
Score = 195 bits (496), Expect = 8e-50
Identities = 103/177 (58%), Positives = 119/177 (67%)
Frame = +3
Query: 3 QEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQS 182
Q KTRLIGPNCPGIIKP +CKIGIMP +IHKPGKIGIVSRSGTLTYEAV QT+ VGLGQS
Sbjct: 159 QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQS 218
Query: 183 LVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKA 362
+GIGGDPFNGTNFVDCLE F D T+ ++++ K
Sbjct: 219 TCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTD---KP 275
Query: 363 VVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIE 533
VV+FIAGLTAPPGRRM Q+KI +L+ AGV V SPA++GA+M E
Sbjct: 276 VVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFE 332
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 1, mitochondrial
precursor (Succinyl-CoA synthetase 1, alpha chain)
(SCS1-alpha)
Length = 347
Score = 193 bits (491), Expect = 3e-49
Identities = 103/177 (58%), Positives = 117/177 (66%)
Frame = +3
Query: 3 QEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQS 182
Q KTRLIGPNCPGIIKP +CKIGIMP +IHKPGKIGIVSRSGTLTYEAV QT+ VGLGQS
Sbjct: 164 QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQS 223
Query: 183 LVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKA 362
+GIGGDPFNGTNFVDCLE F D T+ ++ A K
Sbjct: 224 TCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIK---ASGTEKP 280
Query: 363 VVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIE 533
VV+FIAGLTAPPGRRM Q+KI +L AGV V SPA++G++M E
Sbjct: 281 VVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGSAMYE 337
>sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor (Succinyl-CoA synthetase, alpha
chain) (SCS-alpha)
Length = 331
Score = 189 bits (479), Expect = 8e-48
Identities = 99/185 (53%), Positives = 124/185 (67%), Gaps = 1/185 (0%)
Frame = +3
Query: 3 QEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQS 182
Q K+RL+GPNCPGII+P QCKIGIMP+HIHKPG IGIVSRSGTLTYEAV+QT+Q LGQS
Sbjct: 147 QSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAVNQTTQTDLGQS 206
Query: 183 LVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNR-K 359
LVIGIGGDPF GTNF+D L++F+ D +T+ ++ NA + K
Sbjct: 207 LVIGIGGDPFPGTNFIDALKLFLDDPNTQGIILIGEIGGSAEEDAAEFIRAANASRSTPK 266
Query: 360 AVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEAL 539
VVSFIAG TAP GRRM K +AL+ AGV ++ SPA +G+ ++E L
Sbjct: 267 PVVSFIAGATAPKGRRMGHAGAIVAGGKGTAAAKFEALEAAGVRISRSPATLGSLIVEEL 326
Query: 540 HKLSN 554
+KL +
Sbjct: 327 NKLKH 331
>sp|O08371|SUCD_RICPR Succinyl-CoA synthetase alpha chain (SCS-alpha)
Length = 292
Score = 184 bits (468), Expect = 1e-46
Identities = 91/180 (50%), Positives = 121/180 (67%)
Frame = +3
Query: 9 KTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLV 188
KTRLIGPNCPG+I P +CKIGIMP HIHK G IGIVSRSGTLTYEAV QT+ GLGQS
Sbjct: 116 KTRLIGPNCPGVITPGECKIGIMPGHIHKIGDIGIVSRSGTLTYEAVAQTTAAGLGQSTC 175
Query: 189 IGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAVV 368
+GIGGDP NGT+FVDC+E+F++D+ TK ++++ +K +V
Sbjct: 176 VGIGGDPVNGTSFVDCIEMFLQDDETKAIIMIGEIGGSAEEDAADFIKQSKI---KKPIV 232
Query: 369 SFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIEALHKL 548
SFIAG+TAP +RM ++K++ L+ AGVI+T SPA +G +M++ L+K+
Sbjct: 233 SFIAGITAPADKRMGHAGAIISGGKGSAEDKVEVLQSAGVIITRSPADIGKTMLDLLNKI 292
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,558,796
Number of Sequences: 369166
Number of extensions: 1497437
Number of successful extensions: 3452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3407
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5976365205
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)