Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_C03
(613 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alph... 163 4e-40
sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-... 163 4e-40
sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-form... 161 1e-39
sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alph... 160 2e-39
sp|O19069|SUCA_PIG Succinyl-CoA ligase [GDP-forming] alpha-... 159 7e-39
sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alph... 150 2e-36
sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alph... 132 7e-31
sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alp... 129 6e-30
sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alp... 127 2e-29
sp|O08371|SUCD_RICPR Succinyl-CoA synthetase alpha chain (S... 127 3e-29
>sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 163 bits (412), Expect = 4e-40
Identities = 81/146 (55%), Positives = 101/146 (69%)
Frame = +3
Query: 3 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 182
GIVSRSGTLTYEAVHQT+QVGLGQSL +GIGGDPFNGT+F+DCLE+F+ D T+
Sbjct: 184 GIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIG 243
Query: 183 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 362
+L++HN+GPN K VVSFIAGLTAPPGRRM +EKI
Sbjct: 244 EIGGNAEENAAEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIS 303
Query: 363 ALKHAGVIVTLSPAQMGASMIEALHK 440
AL+ AGV+V++SPAQ+G ++ + K
Sbjct: 304 ALQSAGVVVSMSPAQLGTTIYKEFEK 329
>sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 163 bits (412), Expect = 4e-40
Identities = 83/146 (56%), Positives = 100/146 (68%)
Frame = +3
Query: 3 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 182
GIVSRSGTLTYEAVHQT+QVGLGQSL IGIGGDPFNGTNF+DCL+VF++D T+
Sbjct: 184 GIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIG 243
Query: 183 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 362
+L++HN+GP K VVSFIAG+TAPPGRRM +EKI
Sbjct: 244 EIGGHAEENAAEFLKEHNSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKIS 303
Query: 363 ALKHAGVIVTLSPAQMGASMIEALHK 440
AL+ AGVIV++SPAQ+G M + K
Sbjct: 304 ALQSAGVIVSMSPAQLGTCMYKEFEK 329
>sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor (Succinyl-CoA synthetase, alpha
chain) (SCS-alpha)
Length = 322
Score = 161 bits (408), Expect = 1e-39
Identities = 82/143 (57%), Positives = 97/143 (67%)
Frame = +3
Query: 3 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 182
GIVSRSGTLTYEAVHQT+QVG GQ+L +GIGGDPFNGTNF+DCL VF+ D TK
Sbjct: 175 GIVSRSGTLTYEAVHQTTQVGFGQTLCVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIG 234
Query: 183 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 362
YL++HN+G NRK VVSFIAG+TAPPGRRM +KI+
Sbjct: 235 EIGGSAEEEAAAYLKEHNSGANRKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAADKIN 294
Query: 363 ALKHAGVIVTLSPAQMGASMIEA 431
AL+ AGV+VT SPA++G SM A
Sbjct: 295 ALREAGVVVTDSPAKLGTSMATA 317
>sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 160 bits (406), Expect = 2e-39
Identities = 81/146 (55%), Positives = 100/146 (68%)
Frame = +3
Query: 3 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 182
GIVSRSGTLTYEAVHQT+QVGLGQSL IGIGGDPFNGT+F+DCLEVF+ D T+
Sbjct: 184 GIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIG 243
Query: 183 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 362
+L++HN+GP K VVSFIAG+TAPPGRRM +EKI
Sbjct: 244 EIGGHAEENAAAFLKEHNSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKIS 303
Query: 363 ALKHAGVIVTLSPAQMGASMIEALHK 440
AL+ AGV+V++SPAQ+G ++ + K
Sbjct: 304 ALQSAGVVVSMSPAQLGTTIYKEFEK 329
>sp|O19069|SUCA_PIG Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 350
Score = 159 bits (401), Expect = 7e-39
Identities = 80/146 (54%), Positives = 99/146 (67%)
Frame = +3
Query: 3 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 182
GIVSRSGTLTYEAVHQT+QVGLGQSL +GIGGDPFNGT+F DCLE+F+ D T+
Sbjct: 201 GIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIG 260
Query: 183 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 362
+L++HN+GP K VVSFIAGLTAPPGRRM +EKI
Sbjct: 261 EIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIT 320
Query: 363 ALKHAGVIVTLSPAQMGASMIEALHK 440
AL+ AGV+V++SPAQ+G ++ + K
Sbjct: 321 ALQSAGVVVSMSPAQLGTTIYKEFEK 346
>sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 328
Score = 150 bits (380), Expect = 2e-36
Identities = 77/147 (52%), Positives = 98/147 (66%)
Frame = +3
Query: 3 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 182
G+VSRSGTLTYEAVHQT++VGLGQ+L +GIGGDPFNGT+F+DCLEVF++D TK
Sbjct: 179 GVVSRSGTLTYEAVHQTTEVGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIG 238
Query: 183 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 362
YL ++N+G K VVSFIAG++APPGRRM +KI
Sbjct: 239 EIGGVAEEKAADYLTEYNSGIKAKPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIA 298
Query: 363 ALKHAGVIVTLSPAQMGASMIEALHKL 443
AL+ AGVIVT SPA+MG + + + +L
Sbjct: 299 ALEKAGVIVTRSPAKMGHELFKEMKRL 325
>sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 310
Score = 132 bits (332), Expect = 7e-31
Identities = 73/141 (51%), Positives = 88/141 (62%)
Frame = +3
Query: 3 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 182
GIVSRSGTLTYEAV QT+ VGLGQS IGIGGDPFNGTNF+DCL++F +D T+
Sbjct: 169 GIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIG 228
Query: 183 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 362
+L + P K VVSFIAGL+APPGRRM KI+
Sbjct: 229 EIGGEAEEEAAQWLIDN---PTDKPVVSFIAGLSAPPGRRMGHAGAIISGGKGDANSKIE 285
Query: 363 ALKHAGVIVTLSPAQMGASMI 425
ALK AGV VT SPA++G +++
Sbjct: 286 ALKAAGVTVTFSPAKLGETIL 306
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 2, mitochondrial
precursor (Succinyl-CoA synthetase 2, alpha chain)
(SCS2-alpha)
Length = 341
Score = 129 bits (324), Expect = 6e-30
Identities = 73/142 (51%), Positives = 87/142 (61%)
Frame = +3
Query: 3 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 182
GIVSRSGTLTYEAV QT+ VGLGQS +GIGGDPFNGTNFVDCLE F D T+
Sbjct: 194 GIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIG 253
Query: 183 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 362
++++ K VV+FIAGLTAPPGRRM Q+KI
Sbjct: 254 EIGGTAEEDAAALIKENGTD---KPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK 310
Query: 363 ALKHAGVIVTLSPAQMGASMIE 428
+L+ AGV V SPA++GA+M E
Sbjct: 311 SLRDAGVKVVESPAKIGAAMFE 332
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 1, mitochondrial
precursor (Succinyl-CoA synthetase 1, alpha chain)
(SCS1-alpha)
Length = 347
Score = 127 bits (319), Expect = 2e-29
Identities = 73/142 (51%), Positives = 85/142 (59%)
Frame = +3
Query: 3 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 182
GIVSRSGTLTYEAV QT+ VGLGQS +GIGGDPFNGTNFVDCLE F D T+
Sbjct: 199 GIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIG 258
Query: 183 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 362
++ A K VV+FIAGLTAPPGRRM Q+KI
Sbjct: 259 EIGGTAEEDAAALIK---ASGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIK 315
Query: 363 ALKHAGVIVTLSPAQMGASMIE 428
+L AGV V SPA++G++M E
Sbjct: 316 SLNDAGVKVVESPAKIGSAMYE 337
>sp|O08371|SUCD_RICPR Succinyl-CoA synthetase alpha chain (SCS-alpha)
Length = 292
Score = 127 bits (318), Expect = 3e-29
Identities = 65/147 (44%), Positives = 93/147 (63%)
Frame = +3
Query: 3 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 182
GIVSRSGTLTYEAV QT+ GLGQS +GIGGDP NGT+FVDC+E+F++D+ TK
Sbjct: 149 GIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGGDPVNGTSFVDCIEMFLQDDETKAIIMIG 208
Query: 183 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKID 362
++++ +K +VSFIAG+TAP +RM ++K++
Sbjct: 209 EIGGSAEEDAADFIKQSKI---KKPIVSFIAGITAPADKRMGHAGAIISGGKGSAEDKVE 265
Query: 363 ALKHAGVIVTLSPAQMGASMIEALHKL 443
L+ AGVI+T SPA +G +M++ L+K+
Sbjct: 266 VLQSAGVIITRSPADIGKTMLDLLNKI 292
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,872,758
Number of Sequences: 369166
Number of extensions: 1156706
Number of successful extensions: 2831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2797
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4797864890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)