Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_P06
(417 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-... 118 6e-27
sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alph... 117 9e-27
sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alph... 116 2e-26
sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alph... 116 2e-26
sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-form... 113 1e-25
sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alph... 112 2e-25
sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alp... 109 3e-24
sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alp... 109 3e-24
sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [GDP-form... 106 2e-23
sp|O08371|SUCD_RICPR Succinyl-CoA synthetase alpha chain (S... 104 8e-23
>sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 118 bits (295), Expect = 6e-27
Identities = 54/66 (81%), Positives = 61/66 (92%)
Frame = +3
Query: 3 IMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFV 182
IMP HIHK G+IGIVSRSGTLTYEAVHQT+QVGLGQSL IGIGGDPFNGTNF+DCL+VF+
Sbjct: 172 IMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTNFIDCLDVFL 231
Query: 183 RDEHTK 200
+D T+
Sbjct: 232 KDPATE 237
Score = 35.4 bits (80), Expect = 0.047
Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +1
Query: 280 KSRAVVSFIAGLTAPPDAD-GHAGAI 354
K++ VVSFIAG+TAPP GHAGAI
Sbjct: 265 KAKPVVSFIAGITAPPGRRMGHAGAI 290
>sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 328
Score = 117 bits (293), Expect = 9e-27
Identities = 52/66 (78%), Positives = 61/66 (92%)
Frame = +3
Query: 3 IMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFV 182
IMP HIHK GKIG+VSRSGTLTYEAVHQT++VGLGQ+L +GIGGDPFNGT+F+DCLEVF+
Sbjct: 167 IMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQTLCVGIGGDPFNGTDFIDCLEVFL 226
Query: 183 RDEHTK 200
+D TK
Sbjct: 227 KDPETK 232
Score = 33.5 bits (75), Expect = 0.18
Identities = 17/26 (65%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +1
Query: 280 KSRAVVSFIAGLTAPPDAD-GHAGAI 354
K++ VVSFIAG++APP GHAGAI
Sbjct: 260 KAKPVVSFIAGVSAPPGRRMGHAGAI 285
>sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 116 bits (291), Expect = 2e-26
Identities = 54/66 (81%), Positives = 60/66 (90%)
Frame = +3
Query: 3 IMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFV 182
IMP HIHK G+IGIVSRSGTLTYEAVHQT+QVGLGQSL IGIGGDPFNGT+F+DCLEVF+
Sbjct: 172 IMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTDFIDCLEVFL 231
Query: 183 RDEHTK 200
D T+
Sbjct: 232 NDPATE 237
Score = 35.4 bits (80), Expect = 0.047
Identities = 18/26 (69%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Frame = +1
Query: 280 KSRAVVSFIAGLTAPPDAD-GHAGAI 354
K++ VVSFIAG+TAPP GHAGAI
Sbjct: 265 KAKPVVSFIAGITAPPGRRMGHAGAI 290
>sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 116 bits (290), Expect = 2e-26
Identities = 52/66 (78%), Positives = 60/66 (90%)
Frame = +3
Query: 3 IMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFV 182
IMP HIHK G+IGIVSRSGTLTYEAVHQT+QVGLGQSL +GIGGDPFNGT+F+DCLE+F+
Sbjct: 172 IMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFIDCLEIFL 231
Query: 183 RDEHTK 200
D T+
Sbjct: 232 NDSATE 237
Score = 35.4 bits (80), Expect = 0.047
Identities = 19/25 (76%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Frame = +1
Query: 283 SRAVVSFIAGLTAPPDAD-GHAGAI 354
S+ VVSFIAGLTAPP GHAGAI
Sbjct: 266 SKPVVSFIAGLTAPPGRRMGHAGAI 290
>sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor (Succinyl-CoA synthetase, alpha
chain) (SCS-alpha)
Length = 322
Score = 113 bits (283), Expect = 1e-25
Identities = 52/66 (78%), Positives = 57/66 (86%)
Frame = +3
Query: 3 IMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFV 182
IMP HIHK G IGIVSRSGTLTYEAVHQT+QVG GQ+L +GIGGDPFNGTNF+DCL VF+
Sbjct: 163 IMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTLCVGIGGDPFNGTNFIDCLNVFL 222
Query: 183 RDEHTK 200
D TK
Sbjct: 223 EDPETK 228
Score = 32.7 bits (73), Expect = 0.31
Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 286 RAVVSFIAGLTAPPDAD-GHAGAI 354
+ VVSFIAG+TAPP GHAGAI
Sbjct: 258 KPVVSFIAGVTAPPGRRMGHAGAI 281
>sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 310
Score = 112 bits (281), Expect = 2e-25
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = +3
Query: 3 IMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFV 182
IMP HIHKPGKIGIVSRSGTLTYEAV QT+ VGLGQS IGIGGDPFNGTNF+DCL++F
Sbjct: 157 IMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPFNGTNFIDCLKMFT 216
Query: 183 RDEHTK 200
+D T+
Sbjct: 217 QDPQTE 222
Score = 32.3 bits (72), Expect = 0.40
Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 286 RAVVSFIAGLTAPPDAD-GHAGAI 354
+ VVSFIAGL+APP GHAGAI
Sbjct: 249 KPVVSFIAGLSAPPGRRMGHAGAI 272
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 2, mitochondrial
precursor (Succinyl-CoA synthetase 2, alpha chain)
(SCS2-alpha)
Length = 341
Score = 109 bits (272), Expect = 3e-24
Identities = 52/66 (78%), Positives = 56/66 (84%)
Frame = +3
Query: 3 IMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFV 182
IMP +IHKPGKIGIVSRSGTLTYEAV QT+ VGLGQS +GIGGDPFNGTNFVDCLE F
Sbjct: 182 IMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFF 241
Query: 183 RDEHTK 200
D T+
Sbjct: 242 VDPQTE 247
Score = 32.7 bits (73), Expect = 0.31
Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 286 RAVVSFIAGLTAPPDAD-GHAGAI 354
+ VV+FIAGLTAPP GHAGAI
Sbjct: 274 KPVVAFIAGLTAPPGRRMGHAGAI 297
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 1, mitochondrial
precursor (Succinyl-CoA synthetase 1, alpha chain)
(SCS1-alpha)
Length = 347
Score = 109 bits (272), Expect = 3e-24
Identities = 52/66 (78%), Positives = 56/66 (84%)
Frame = +3
Query: 3 IMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFV 182
IMP +IHKPGKIGIVSRSGTLTYEAV QT+ VGLGQS +GIGGDPFNGTNFVDCLE F
Sbjct: 187 IMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFF 246
Query: 183 RDEHTK 200
D T+
Sbjct: 247 VDPQTE 252
Score = 32.7 bits (73), Expect = 0.31
Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 286 RAVVSFIAGLTAPPDAD-GHAGAI 354
+ VV+FIAGLTAPP GHAGAI
Sbjct: 279 KPVVAFIAGLTAPPGRRMGHAGAI 302
>sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor (Succinyl-CoA synthetase, alpha
chain) (SCS-alpha)
Length = 331
Score = 106 bits (264), Expect = 2e-23
Identities = 50/66 (75%), Positives = 59/66 (89%)
Frame = +3
Query: 3 IMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFV 182
IMP+HIHKPG IGIVSRSGTLTYEAV+QT+Q LGQSLVIGIGGDPF GTNF+D L++F+
Sbjct: 170 IMPSHIHKPGCIGIVSRSGTLTYEAVNQTTQTDLGQSLVIGIGGDPFPGTNFIDALKLFL 229
Query: 183 RDEHTK 200
D +T+
Sbjct: 230 DDPNTQ 235
Score = 31.6 bits (70), Expect = 0.68
Identities = 18/28 (64%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +1
Query: 274 RSKSRAVVSFIAGLTAPPDAD-GHAGAI 354
RS + VVSFIAG TAP GHAGAI
Sbjct: 262 RSTPKPVVSFIAGATAPKGRRMGHAGAI 289
>sp|O08371|SUCD_RICPR Succinyl-CoA synthetase alpha chain (SCS-alpha)
Length = 292
Score = 104 bits (259), Expect = 8e-23
Identities = 48/66 (72%), Positives = 56/66 (84%)
Frame = +3
Query: 3 IMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFV 182
IMP HIHK G IGIVSRSGTLTYEAV QT+ GLGQS +GIGGDP NGT+FVDC+E+F+
Sbjct: 137 IMPGHIHKIGDIGIVSRSGTLTYEAVAQTTAAGLGQSTCVGIGGDPVNGTSFVDCIEMFL 196
Query: 183 RDEHTK 200
+D+ TK
Sbjct: 197 QDDETK 202
Score = 32.3 bits (72), Expect = 0.40
Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +1
Query: 286 RAVVSFIAGLTAPPDAD-GHAGAI 354
+ +VSFIAG+TAP D GHAGAI
Sbjct: 229 KPIVSFIAGITAPADKRMGHAGAI 252
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,259,870
Number of Sequences: 369166
Number of extensions: 842899
Number of successful extensions: 2080
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1952582385
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)