Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_N04
(446 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alph... 79 5e-15
sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-form... 77 1e-14
sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-... 77 2e-14
sp|O19069|SUCA_PIG Succinyl-CoA ligase [GDP-forming] alpha-... 76 3e-14
sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alph... 76 4e-14
sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alph... 67 2e-11
sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alph... 59 4e-09
sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alp... 58 1e-08
sp|O08371|SUCD_RICPR Succinyl-CoA synthetase alpha chain (S... 57 2e-08
sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alp... 56 3e-08
>sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 79.0 bits (193), Expect = 5e-15
Identities = 38/74 (51%), Positives = 51/74 (68%)
Frame = +1
Query: 52 YLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLS 231
+L++HN+GPN K VVSFIAGLTAPPGRRM +EKI AL+ AGV+V++S
Sbjct: 256 FLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMS 315
Query: 232 PAQMGASMIEALHK 273
PAQ+G ++ + K
Sbjct: 316 PAQLGTTIYKEFEK 329
>sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor (Succinyl-CoA synthetase, alpha
chain) (SCS-alpha)
Length = 322
Score = 77.4 bits (189), Expect = 1e-14
Identities = 39/71 (54%), Positives = 49/71 (69%)
Frame = +1
Query: 52 YLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLS 231
YL++HN+G NRK VVSFIAG+TAPPGRRM +KI+AL+ AGV+VT S
Sbjct: 247 YLKEHNSGANRKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAADKINALREAGVVVTDS 306
Query: 232 PAQMGASMIEA 264
PA++G SM A
Sbjct: 307 PAKLGTSMATA 317
>sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 77.0 bits (188), Expect = 2e-14
Identities = 38/74 (51%), Positives = 49/74 (66%)
Frame = +1
Query: 52 YLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLS 231
+L++HN+GP K VVSFIAG+TAPPGRRM +EKI AL+ AGVIV++S
Sbjct: 256 FLKEHNSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVIVSMS 315
Query: 232 PAQMGASMIEALHK 273
PAQ+G M + K
Sbjct: 316 PAQLGTCMYKEFEK 329
>sp|O19069|SUCA_PIG Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 350
Score = 76.3 bits (186), Expect = 3e-14
Identities = 37/74 (50%), Positives = 50/74 (67%)
Frame = +1
Query: 52 YLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLS 231
+L++HN+GP K VVSFIAGLTAPPGRRM +EKI AL+ AGV+V++S
Sbjct: 273 FLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMS 332
Query: 232 PAQMGASMIEALHK 273
PAQ+G ++ + K
Sbjct: 333 PAQLGTTIYKEFEK 346
>sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 75.9 bits (185), Expect = 4e-14
Identities = 36/74 (48%), Positives = 50/74 (67%)
Frame = +1
Query: 52 YLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLS 231
+L++HN+GP K VVSFIAG+TAPPGRRM +EKI AL+ AGV+V++S
Sbjct: 256 FLKEHNSGPKAKPVVSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMS 315
Query: 232 PAQMGASMIEALHK 273
PAQ+G ++ + K
Sbjct: 316 PAQLGTTIYKEFEK 329
>sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 328
Score = 66.6 bits (161), Expect = 2e-11
Identities = 35/75 (46%), Positives = 47/75 (62%)
Frame = +1
Query: 52 YLEKHNAGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLS 231
YL ++N+G K VVSFIAG++APPGRRM +KI AL+ AGVIVT S
Sbjct: 251 YLTEYNSGIKAKPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAALEKAGVIVTRS 310
Query: 232 PAQMGASMIEALHKL 276
PA+MG + + + +L
Sbjct: 311 PAKMGHELFKEMKRL 325
>sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 310
Score = 59.3 bits (142), Expect = 4e-09
Identities = 31/61 (50%), Positives = 38/61 (62%)
Frame = +1
Query: 76 PNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASM 255
P K VVSFIAGL+APPGRRM KI+ALK AGV VT SPA++G ++
Sbjct: 246 PTDKPVVSFIAGLSAPPGRRMGHAGAIISGGKGDANSKIEALKAAGVTVTFSPAKLGETI 305
Query: 256 I 258
+
Sbjct: 306 L 306
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 2, mitochondrial
precursor (Succinyl-CoA synthetase 2, alpha chain)
(SCS2-alpha)
Length = 341
Score = 57.8 bits (138), Expect = 1e-08
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = +1
Query: 85 KAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIE 261
K VV+FIAGLTAPPGRRM Q+KI +L+ AGV V SPA++GA+M E
Sbjct: 274 KPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLRDAGVKVVESPAKIGAAMFE 332
>sp|O08371|SUCD_RICPR Succinyl-CoA synthetase alpha chain (SCS-alpha)
Length = 292
Score = 56.6 bits (135), Expect = 2e-08
Identities = 26/65 (40%), Positives = 42/65 (64%)
Frame = +1
Query: 82 RKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGASMIE 261
+K +VSFIAG+TAP +RM ++K++ L+ AGVI+T SPA +G +M++
Sbjct: 228 KKPIVSFIAGITAPADKRMGHAGAIISGGKGSAEDKVEVLQSAGVIITRSPADIGKTMLD 287
Query: 262 ALHKL 276
L+K+
Sbjct: 288 LLNKI 292
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 1, mitochondrial
precursor (Succinyl-CoA synthetase 1, alpha chain)
(SCS1-alpha)
Length = 347
Score = 56.2 bits (134), Expect = 3e-08
Identities = 31/64 (48%), Positives = 38/64 (59%)
Frame = +1
Query: 70 AGPNRKAVVSFIAGLTAPPGRRMXXXXXXXXXXXXXXQEKIDALKHAGVIVTLSPAQMGA 249
A K VV+FIAGLTAPPGRRM Q+KI +L AGV V SPA++G+
Sbjct: 274 ASGTEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKSLNDAGVKVVESPAKIGS 333
Query: 250 SMIE 261
+M E
Sbjct: 334 AMYE 337
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,809,580
Number of Sequences: 369166
Number of extensions: 833698
Number of successful extensions: 1919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1918
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2394311040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)