Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_J23
(872 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alph... 394 e-109
sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alph... 384 e-106
sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-... 382 e-106
sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alph... 362 e-100
sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alph... 361 2e-99
sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-form... 347 2e-95
sp|O19069|SUCA_PIG Succinyl-CoA ligase [GDP-forming] alpha-... 341 2e-93
sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alp... 333 5e-91
sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alp... 330 2e-90
sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [GDP-form... 320 2e-87
>sp|P53597|SUCA_HUMAN Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 394 bits (1012), Expect = e-109
Identities = 189/266 (71%), Positives = 218/266 (81%), Gaps = 1/266 (0%)
Frame = +3
Query: 21 VRTC-YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLD 197
+R C Y SR HL + + TK+ICQG TGKQGTFH++QA++YGT VGG +PGKGGQTHL
Sbjct: 25 IRHCSYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLG 84
Query: 198 LPVFNTVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKN 377
LPVFNTVKEAKE T ASVI+VPPP AAA+I EAI+AEIPLVVCITEGIPQQDMVRVK+
Sbjct: 85 LPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKH 144
Query: 378 RLINQEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVG 557
+L+ QEKTRLIGPNCPG+I P +CKIGIMP HIHK G+IGIVSRSGTLTYEAVHQT+QVG
Sbjct: 145 KLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVG 204
Query: 558 LGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGP 737
LGQSL +GIGGDPFNGT+F+DCLE+F+ D T+ +L++HN+GP
Sbjct: 205 LGQSLCVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGP 264
Query: 738 NRKAVVSFIAGLTAPPGRRMGHAGAI 815
N K VVSFIAGLTAPPGRRMGHAGAI
Sbjct: 265 NSKPVVSFIAGLTAPPGRRMGHAGAI 290
>sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 384 bits (987), Expect = e-106
Identities = 186/261 (71%), Positives = 210/261 (80%)
Frame = +3
Query: 33 YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFN 212
Y SR H+ I + TK+ICQG TGKQGTFH++QA++YGT VGG +PGKGGQ HL LPVFN
Sbjct: 30 YTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFN 89
Query: 213 TVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQ 392
TVKEAKE T ASVI+VPPP AAA+I EAIDAEIPLVVCITEGIPQQDMVRVK+RL Q
Sbjct: 90 TVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQ 149
Query: 393 EKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSL 572
TRLIGPNCPG+I P +CKIGIMP HIHK G+IGIVSRSGTLTYEAVHQT+QVGLGQSL
Sbjct: 150 GTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 209
Query: 573 VIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAV 752
IGIGGDPFNGT+F+DCLEVF+ D T+ +L++HN+GP K V
Sbjct: 210 CIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPV 269
Query: 753 VSFIAGLTAPPGRRMGHAGAI 815
VSFIAG+TAPPGRRMGHAGAI
Sbjct: 270 VSFIAGITAPPGRRMGHAGAI 290
>sp|P13086|SUCA_RAT Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 333
Score = 382 bits (981), Expect = e-106
Identities = 185/261 (70%), Positives = 212/261 (81%)
Frame = +3
Query: 33 YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFN 212
Y SR ++ I + TKVICQG TGKQGTFH++QA++YGT VGG +PGKGG+ HL LPVFN
Sbjct: 30 YTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFN 89
Query: 213 TVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQ 392
TVKEAKE T ASVI+VPPP AAA+I EAIDAEIPLVVCITEGIPQQDM+RVK++L Q
Sbjct: 90 TVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMLRVKHKLTRQ 149
Query: 393 EKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSL 572
KTRLIGPNCPGII P +CKIGIMP HIHK G+IGIVSRSGTLTYEAVHQT+QVGLGQSL
Sbjct: 150 GKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 209
Query: 573 VIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAV 752
IGIGGDPFNGTNF+DCL+VF++D T+ +L++HN+GP K V
Sbjct: 210 CIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPV 269
Query: 753 VSFIAGLTAPPGRRMGHAGAI 815
VSFIAG+TAPPGRRMGHAGAI
Sbjct: 270 VSFIAGITAPPGRRMGHAGAI 290
>sp|P36967|SUCA_DICDI Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 310
Score = 362 bits (929), Expect = e-100
Identities = 181/261 (69%), Positives = 206/261 (78%)
Frame = +3
Query: 33 YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFN 212
+ ++P + I++ TKVICQG TG QGTFH+KQAI+YGT+ VGGVSPGKGGQ HLDLP FN
Sbjct: 15 FFSTKPSVLINKNTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLDLPAFN 74
Query: 213 TVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQ 392
TVKEAKEAT +A+VI+VPPP AAA+I EAIDAE+ LVVCITEGIPQQDMV+VK L Q
Sbjct: 75 TVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQ 134
Query: 393 EKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSL 572
KTRLIGPNCPGIIKP +CKIGIMP HIHKPGKIGIVSRSGTLTYEAV QT+ VGLGQS
Sbjct: 135 NKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQST 194
Query: 573 VIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAV 752
IGIGGDPFNGTNF+DCL++F +D T+ +L + P K V
Sbjct: 195 CIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDN---PTDKPV 251
Query: 753 VSFIAGLTAPPGRRMGHAGAI 815
VSFIAGL+APPGRRMGHAGAI
Sbjct: 252 VSFIAGLSAPPGRRMGHAGAI 272
>sp|Q94522|SUCA_DROME Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 328
Score = 361 bits (926), Expect = 2e-99
Identities = 170/261 (65%), Positives = 213/261 (81%)
Frame = +3
Query: 33 YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFN 212
Y+++R +L ++ ++VICQG TGKQGTFH++QA++YGT VGG+SP KGG HL LPVF
Sbjct: 25 YNKTRGNLKLNGDSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFA 84
Query: 213 TVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQ 392
+V EAK+AT+P A+VI+VPPP AAA+I+EA++AEIPL+VCITEG+PQ DMV+VK+ LI+Q
Sbjct: 85 SVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQ 144
Query: 393 EKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSL 572
K+RL+GPNCPGII P QCKIGIMP HIHK GKIG+VSRSGTLTYEAVHQT++VGLGQ+L
Sbjct: 145 SKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQTL 204
Query: 573 VIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAV 752
+GIGGDPFNGT+F+DCLEVF++D TK YL ++N+G K V
Sbjct: 205 CVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKAADYLTEYNSGIKAKPV 264
Query: 753 VSFIAGLTAPPGRRMGHAGAI 815
VSFIAG++APPGRRMGHAGAI
Sbjct: 265 VSFIAGVSAPPGRRMGHAGAI 285
>sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor (Succinyl-CoA synthetase, alpha
chain) (SCS-alpha)
Length = 322
Score = 347 bits (891), Expect = 2e-95
Identities = 171/261 (65%), Positives = 197/261 (75%)
Frame = +3
Query: 33 YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFN 212
Y+ + +L I++ TKVI QG TGKQGTFH KQ ++Y T VGGV+ K G HL LPVF
Sbjct: 21 YNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVNANKAGTEHLGLPVFK 80
Query: 213 TVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQ 392
V EA+ T DASVI+VP A ++I EA+DAEIPLVVCITEGIPQ DMVRVK+RL+ Q
Sbjct: 81 NVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGIPQHDMVRVKSRLLKQ 140
Query: 393 EKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSL 572
KTRL+GPNCPGII +QCKIGIMP HIHK G IGIVSRSGTLTYEAVHQT+QVG GQ+L
Sbjct: 141 NKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTYEAVHQTTQVGFGQTL 200
Query: 573 VIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAV 752
+GIGGDPFNGTNF+DCL VF+ D TK YL++HN+G NRK V
Sbjct: 201 CVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIGEIGGSAEEEAAAYLKEHNSGANRKPV 260
Query: 753 VSFIAGLTAPPGRRMGHAGAI 815
VSFIAG+TAPPGRRMGHAGAI
Sbjct: 261 VSFIAGVTAPPGRRMGHAGAI 281
>sp|O19069|SUCA_PIG Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial
precursor (Succinyl-CoA synthetase, alpha chain)
(SCS-alpha)
Length = 350
Score = 341 bits (874), Expect = 2e-93
Identities = 178/287 (62%), Positives = 208/287 (72%), Gaps = 22/287 (7%)
Frame = +3
Query: 21 VRTC-YHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLD 197
+R C Y SR HL + + TKVICQG TGKQGTFH++QA++YGT+ VGG +PGKGG+THL
Sbjct: 25 IRHCSYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLG 84
Query: 198 LPVFNTVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKN 377
LPVFNTVKEAKE T ASVI+VPPP AAA+I EAIDAE+PLVVCITEGIPQQDMVRVK+
Sbjct: 85 LPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKH 144
Query: 378 RLINQEKTRLIGPNCPGII-------------------KPNQCKIGIM--PAHIHKPGKI 494
RL+ Q KTRLIGPNCPG+I + KI ++ IH +
Sbjct: 145 RLLRQGKTRLIGPNCPGVINRFLRFAVYITSRVFTCTQQEEYRKIPLLFGTRSIH----M 200
Query: 495 GIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXX 674
GIVSRSGTLTYEAVHQT+QVGLGQSL +GIGGDPFNGT+F DCLE+F+ D T+
Sbjct: 201 GIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIG 260
Query: 675 XXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTAPPGRRMGHAGAI 815
+L++HN+GP K VVSFIAGLTAPPGRRMGHAGAI
Sbjct: 261 EIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAI 307
>sp|P68209|SUCA1_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 1, mitochondrial
precursor (Succinyl-CoA synthetase 1, alpha chain)
(SCS1-alpha)
Length = 347
Score = 333 bits (853), Expect = 5e-91
Identities = 171/273 (62%), Positives = 199/273 (72%), Gaps = 4/273 (1%)
Frame = +3
Query: 9 LKSFVRTCYHRSRPH----LSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGK 176
L S ++ S PH + + + T+V+CQG+TGK GTFHT+QAI+YGT V GV+P K
Sbjct: 33 LTSLTQSRSFASDPHPPAAVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKK 92
Query: 177 GGQTHLDLPVFNTVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQ 356
GG HL LPVFN+V EAK T +ASVI+VP P AAA+IME I+AE+ L+VCITEGIPQ
Sbjct: 93 GGTEHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQH 152
Query: 357 DMVRVKNRLINQEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAV 536
DMVRVK+ L +Q KTRLIGPNCPGIIKP +CKIGIMP +IHKPGKIGIVSRSGTLTYEAV
Sbjct: 153 DMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAV 212
Query: 537 HQTSQVGLGQSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYL 716
QT+ VGLGQS +GIGGDPFNGTNFVDCLE F D T+ +
Sbjct: 213 FQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALI 272
Query: 717 EKHNAGPNRKAVVSFIAGLTAPPGRRMGHAGAI 815
+ A K VV+FIAGLTAPPGRRMGHAGAI
Sbjct: 273 K---ASGTEKPVVAFIAGLTAPPGRRMGHAGAI 302
>sp|Q8LAD2|SUCA2_ARATH Succinyl-CoA ligase [GDP-forming] alpha-chain 2, mitochondrial
precursor (Succinyl-CoA synthetase 2, alpha chain)
(SCS2-alpha)
Length = 341
Score = 330 bits (847), Expect = 2e-90
Identities = 166/252 (65%), Positives = 190/252 (75%)
Frame = +3
Query: 60 ISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLPVFNTVKEAKEAT 239
+ + T+VICQG+TGK GTFHT+QAI+YGT V GV+P KGG HL LPVFNTV EAK T
Sbjct: 49 VDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAET 108
Query: 240 NPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRLINQEKTRLIGPN 419
+ASVI+VP P AAA+IME + AE+ L+VCITEGIPQ DMVRVK L +Q KTRLIGPN
Sbjct: 109 KANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPN 168
Query: 420 CPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLGQSLVIGIGGDPF 599
CPGIIKP +CKIGIMP +IHKPGKIGIVSRSGTLTYEAV QT+ VGLGQS +GIGGDPF
Sbjct: 169 CPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPF 228
Query: 600 NGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNRKAVVSFIAGLTA 779
NGTNFVDCLE F D T+ ++++ K VV+FIAGLTA
Sbjct: 229 NGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAALIKENGTD---KPVVAFIAGLTA 285
Query: 780 PPGRRMGHAGAI 815
PPGRRMGHAGAI
Sbjct: 286 PPGRRMGHAGAI 297
>sp|O13750|SUCA_SCHPO Probable succinyl-CoA ligase [GDP-forming] alpha-chain,
mitochondrial precursor (Succinyl-CoA synthetase, alpha
chain) (SCS-alpha)
Length = 331
Score = 320 bits (821), Expect = 2e-87
Identities = 161/265 (60%), Positives = 195/265 (73%), Gaps = 1/265 (0%)
Frame = +3
Query: 24 RTCYHRSRPHLSISRTTKVICQGLTGKQGTFHTKQAIDYGTHFVGGVSPGKGGQTHLDLP 203
++ Y ++ P+L I+ TKVI QG TGKQGTFH + A+DYGT VGG +P K G THL P
Sbjct: 25 KSLYEQTIPNLMINSDTKVIFQGFTGKQGTFHAQHAMDYGTKVVGGTNPKKAGTTHLGKP 84
Query: 204 VFNTVKEAKEATNPDASVIFVPPPMAAASIMEAIDAEIPLVVCITEGIPQQDMVRVKNRL 383
VF T++EA + T DAS +FVPPP+AA +I EAI AE+PL+V ITEGIPQ DM+RV + L
Sbjct: 85 VFGTIEEAMKETKADASAVFVPPPLAAGAIEEAIAAEVPLIVAITEGIPQHDMLRVSDIL 144
Query: 384 INQEKTRLIGPNCPGIIKPNQCKIGIMPAHIHKPGKIGIVSRSGTLTYEAVHQTSQVGLG 563
Q K+RL+GPNCPGII+P QCKIGIMP+HIHKPG IGIVSRSGTLTYEAV+QT+Q LG
Sbjct: 145 KTQSKSRLVGPNCPGIIRPGQCKIGIMPSHIHKPGCIGIVSRSGTLTYEAVNQTTQTDLG 204
Query: 564 QSLVIGIGGDPFNGTNFVDCLEVFVRDEHTKXXXXXXXXXXXXXXXXXMYLEKHNAGPNR 743
QSLVIGIGGDPF GTNF+D L++F+ D +T+ ++ NA +
Sbjct: 205 QSLVIGIGGDPFPGTNFIDALKLFLDDPNTQGIILIGEIGGSAEEDAAEFIRAANASRST 264
Query: 744 -KAVVSFIAGLTAPPGRRMGHAGAI 815
K VVSFIAG TAP GRRMGHAGAI
Sbjct: 265 PKPVVSFIAGATAPKGRRMGHAGAI 289
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,076,633
Number of Sequences: 369166
Number of extensions: 2176266
Number of successful extensions: 5564
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5493
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)