Planarian EST Database

DrC_01030

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_01030 AATGCTATTACGTAATCATATTGTCATTGTAACATTTTCTATTAGCCTCCAGGAACTGGC AAATCGTATTTAGCAAAAGCAGTCGCTACAGAAGCTAATAATTCGACCTTTTTCTCGGTT TCCAGCTCTAATTTAGTTTCGAAATGGCTGGGAGAAAGTGAGAAATTAGTGAAAAGTTTA TTTGAAGTGGCTAGAGAAAAGAAACCGAGCATAATTTTCATTGATGAAATCGATTCGTTG TGCAGTAATCGGGGGGACAACGACTCCGAATCGGCAAAACGGATCAAAACTGAGTTCCTC GTCCAGATGCAAGGCGTCTCCTCAGACAACGACAATGTTCTGATTCTAGCCGCCACAAAC ATCCCCTGGGCCCTCGACTCTGCGATTCGTCGAAGATTCGAGAAGAGAATCTATATCGCA TTACCGGAAGCGGGCGCTCGAGCAGAAATGTTCAAATTATCGATGGGGAACAAACCAGGT CAGCACGATCTGACTCCGCAGAATTTCAGCGAGCTCGGCCATCTATCGGAGGGGTACTCT GGGGCGGACATCAGCATCGCGGTGAGGGACGCCCTGATGGTGCCCGTGAGGAAGGTGCAG ACAGCCACGCATTTCAGGAGGGTCCGGGGGCCCAGTCCGACGGATCCCAGCGTGATCGTT AGCGATCTGCTGACCCCGTGCTCACCTGGTTCTCCTGGTGCTATCGAGATGAACTGGCAA ACCGTGGACAGCGAGAAACTGCTGGAACCTTGCGTTACATTTGCCGACATGAAGCTCGCT CTGTCCCGCAACAAACCCACAGTTAATCAGAAGGATCTCGAGAAACTGATCCAGTTCACC ACTGATTTCGGGCAGGACGGATGATGACGAGGTGGAGACCGCGACGAAACTTGATACAAT CGATGATAAATAAATAATTACTCTATGCTTCTTGTTGTTCAGATTTGTAACATTAATATT ATTATTATTACTATTTTATCGATCAATCAATCAGTTACGCATTGTTACATCTGTTTGTTG GCGCAGTTATTTGATTTGATATGCTGCTATTACCATCCTGATCCTGATCATTACTGTGTG TGTGTGCGCGTGTTGGTGTGCCTGTGGTTCCGAGTGCACGAGGTTGTGTGCGTGTGTGTG TGCGTGTGAAGCTGTCAGTATGTACAGGTGCATTATACATCACAATACCTGATATATCAT CATCATTTTATTAATGCGCTCTCATGAGTACATTTTCTGTTTACCAATAAATTAATAAAT G

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01030
         (1261 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46467|VPS4B_MOUSE  Vacuolar sorting protein 4b (SKD1 pro...   363   e-100
sp|O75351|VPS4B_HUMAN  Vacuolar sorting protein 4b (SKD1 pro...   360   4e-99
sp|Q8VEJ9|VPS4A_MOUSE  Vacuolar sorting protein 4a                353   8e-97
sp|Q9UN37|VPS4A_HUMAN  Vacuolar sorting protein 4a (SKD2 pro...   350   4e-96
sp|Q09803|VPS4_SCHPO  Suppressor protein of bem1/bed5 double...   300   6e-81
sp|P52917|VPS4_YEAST  Vacuolar protein sorting-associated pr...   289   1e-77
sp|Q5XIK7|KATL1_RAT  Katanin p60 ATPase-containing subunit A...   173   1e-42
sp|Q8K0T4|KATL1_MOUSE  Katanin p60 ATPase-containing subunit...   172   2e-42
sp|Q9BW62|KATL1_HUMAN  Katanin p60 ATPase-containing subunit...   170   7e-42
sp|Q6E0V2|KTNA1_RAT  Katanin p60 ATPase-containing subunit A...   165   3e-40

>sp|P46467|VPS4B_MOUSE Vacuolar sorting protein 4b (SKD1 protein)
          Length = 444

 Score =  363 bits (931), Expect = e-100
 Identities = 185/274 (67%), Positives = 215/274 (78%)
 Frame = +1

Query: 34  IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
           + + PPGTGKSYLAKAVATEA               KWLGESEKLVK+LF++ARE KPSI
Sbjct: 171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230

Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
           IFIDEIDSLC +R +N+SE+A+RIKTEFLVQMQGV  DND +L+L ATNIPW LDSAIRR
Sbjct: 231 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 290

Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
           RFEKRIYI LPEA ARA MF+L +G+   Q+ LT  +F ELG  ++GYSGADISI VRDA
Sbjct: 291 RFEKRIYIPLPEAHARAAMFRLHLGST--QNSLTEADFQELGRKTDGYSGADISIIVRDA 348

Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
           LM PVRKVQ+ATHF++VRGPS  DP+ IV+DLLTPCSPG PGAIEM W  V  +KLLEP 
Sbjct: 349 LMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPV 408

Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQ 855
           V+  DM  +LS  KPTVN++DL KL +FT DFGQ
Sbjct: 409 VSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442

>sp|O75351|VPS4B_HUMAN Vacuolar sorting protein 4b (SKD1 protein)
          Length = 444

 Score =  360 bits (925), Expect = 4e-99
 Identities = 184/274 (67%), Positives = 212/274 (77%)
 Frame = +1

Query: 34  IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
           + + PPGTGKSYLAKAVATEA               KWLGESEKLVK+LF++ARE KPSI
Sbjct: 171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230

Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
           IFIDEIDSLC +R +N+SE+A+RIKTEFLVQMQGV  DND +L+L ATNIPW LDSAIRR
Sbjct: 231 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 290

Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
           RFEKRIYI LPE  ARA MFKL +G    Q+ LT  +F ELG  ++GYSGADISI VRDA
Sbjct: 291 RFEKRIYIPLPEPHARAAMFKLHLGTT--QNSLTEADFRELGRKTDGYSGADISIIVRDA 348

Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
           LM PVRKVQ+ATHF++VRGPS  DP+ +V DLLTPCSPG PGAIEM W  V  +KLLEP 
Sbjct: 349 LMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPV 408

Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQ 855
           V+ +DM  +LS  KPTVN+ DL KL +FT DFGQ
Sbjct: 409 VSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 442

>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar sorting protein 4a
          Length = 437

 Score =  353 bits (905), Expect = 8e-97
 Identities = 177/274 (64%), Positives = 212/274 (77%)
 Frame = +1

Query: 34  IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
           + + PPGTGKSYLAKAVATEA               KWLGESEKLVK+LFE+AR+ KPSI
Sbjct: 164 LLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSI 223

Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
           IFIDE+DSLC +R +N+SE+A+RIKTEFLVQMQGV ++ND  L+L ATNIPW LDSAIRR
Sbjct: 224 IFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR 283

Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
           RFEKRIYI LPE  ARA+MF+L +G+ P  H+LT  N  EL   +EGYSGADISI VRD+
Sbjct: 284 RFEKRIYIPLPEEAARAQMFRLHLGSTP--HNLTDANIHELARKTEGYSGADISIIVRDS 341

Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
           LM PVRKVQ+ATHF++V GPS T+PSV++ DLLTPCSPG PGAIEM W  V  +KLLEP 
Sbjct: 342 LMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPV 401

Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQ 855
           V  +DM  +L+  +PTVN  DL K+ +F+ DFGQ
Sbjct: 402 VCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQ 435

>sp|Q9UN37|VPS4A_HUMAN Vacuolar sorting protein 4a (SKD2 protein) (hVPS4) (VPS4-1)
          Length = 437

 Score =  350 bits (899), Expect = 4e-96
 Identities = 175/274 (63%), Positives = 212/274 (77%)
 Frame = +1

Query: 34  IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
           + + PPGTGKSYLAKAVATEA               KWLGESEKLVK+LFE+AR+ KPSI
Sbjct: 164 LLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSI 223

Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
           IFIDE+DSLC +R +N+SE+A+RIKTEFLVQMQGV ++ND  L+L ATNIPW LDSAIRR
Sbjct: 224 IFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR 283

Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
           RFEKRIYI LPE  ARA+MF+L +G+ P  H+LT  N  EL   +EGYSGADISI VRD+
Sbjct: 284 RFEKRIYIPLPEEAARAQMFRLHLGSTP--HNLTDANIHELARKTEGYSGADISIIVRDS 341

Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
           LM PVRKVQ+ATHF++V GPS T+PS+++ DLLTPCSPG PGA+EM W  V  +KLLEP 
Sbjct: 342 LMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPV 401

Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQ 855
           V  +DM  +L+  +PTVN  DL K+ +F+ DFGQ
Sbjct: 402 VCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQ 435

>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
          Length = 432

 Score =  300 bits (768), Expect = 6e-81
 Identities = 157/273 (57%), Positives = 192/273 (70%)
 Frame = +1

Query: 34  IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
           + Y PPGTGKSYLAKAVATEA               KW+GESE+LV+ LFE+ARE+KPSI
Sbjct: 166 LLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVS-KWMGESERLVRQLFEMAREQKPSI 224

Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
           IFIDEIDSLC +R + +SES++RIKTEFLVQM GV  D   VL+L ATNIPW LDSAIRR
Sbjct: 225 IFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR 284

Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
           RFEKRIYI LP A ARA MF+L++G  P   +LT Q+F EL  +++GYSG+DISI VRDA
Sbjct: 285 RFEKRIYIPLPNAHARARMFELNVGKIPS--ELTSQDFKELAKMTDGYSGSDISIVVRDA 342

Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
           +M PVR++ TATHF+ V              L+TPCSPG P A E +W  V+ E ++EP 
Sbjct: 343 IMEPVRRIHTATHFKEVYDNKSN------RTLVTPCSPGDPDAFESSWLEVNPEDIMEPK 396

Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFG 852
           +T  D   A+ + KPT+N  D+EK  QFT DFG
Sbjct: 397 LTVRDFYSAVRKVKPTLNAGDIEKHTQFTKDFG 429

>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein VPS4 (END13 protein)
           (DOA4-independent degradation protein 6)
          Length = 437

 Score =  289 bits (740), Expect = 1e-77
 Identities = 151/274 (55%), Positives = 195/274 (71%)
 Frame = +1

Query: 34  IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
           + Y PPGTGKSYLAKAVATEA               KW+GESEKLVK LF +ARE KPSI
Sbjct: 170 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGESEKLVKQLFAMARENKPSI 228

Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
           IFIDE+D+L   RG+ +SE+++RIKTE LVQM GV +D+  VL+L ATNIPW LDSAIRR
Sbjct: 229 IFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 288

Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
           RFE+RIYI LP+  AR  MF++++G+ P    LT +++  LG ++EGYSG+DI++ V+DA
Sbjct: 289 RFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVVKDA 346

Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
           LM P+RK+Q+ATHF+ V   S  D     +  LTPCSPG  GAIEM+W  +++++L EP 
Sbjct: 347 LMQPIRKIQSATHFKDV---STEDDE---TRKLTPCSPGDDGAIEMSWTDIEADELKEPD 400

Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQ 855
           +T  D   A+   +PTVN+ DL K  QFT DFGQ
Sbjct: 401 LTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 434

>sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
           A-like 1) (p60 katanin-like 1)
          Length = 488

 Score =  173 bits (438), Expect = 1e-42
 Identities = 112/276 (40%), Positives = 157/276 (56%), Gaps = 7/276 (2%)
 Frame = +1

Query: 46  PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSIIFID 225
           PPGTGK+ LAKAVATE                K+ GESEKLV+ LFE+AR   P+ IFID
Sbjct: 247 PPGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGESEKLVRLLFEMARFYAPTTIFID 305

Query: 226 EIDSLCSNRGDNDS-ESAKRIKTEFLVQMQGVSS--DNDN----VLILAATNIPWALDSA 384
           EIDS+CS RG +D  E+++R+K+E L+QM GV    +ND+    V++LAATN PW +D A
Sbjct: 306 EIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEA 365

Query: 385 IRRRFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAV 564
           +RRR EKRIYI LP A  RAE+ K+S+       D+   +  ++   +EGYSGADI+   
Sbjct: 366 LRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDI---HLEDIAEKTEGYSGADITNIC 422

Query: 565 RDALMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLL 744
           RDA ++ +R        RR+ G SP +   +                        S++ L
Sbjct: 423 RDASLMAMR--------RRINGLSPEEIRAL------------------------SKEEL 450

Query: 745 EPCVTFADMKLALSRNKPTVNQKDLEKLIQFTTDFG 852
           +  VT  D++LAL +   +V+  DLEK  ++  +FG
Sbjct: 451 QMPVTRGDLELALKKIAKSVSAADLEKYEKWMVEFG 486

>sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
           A-like 1) (p60 katanin-like 1)
          Length = 488

 Score =  172 bits (436), Expect = 2e-42
 Identities = 112/276 (40%), Positives = 157/276 (56%), Gaps = 7/276 (2%)
 Frame = +1

Query: 46  PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSIIFID 225
           PPGTGK+ LAKAVATE                K+ GESEKLV+ LFE+AR   P+ IFID
Sbjct: 247 PPGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGESEKLVRLLFEMARFYAPTTIFID 305

Query: 226 EIDSLCSNRGDNDS-ESAKRIKTEFLVQMQGVSS--DNDN----VLILAATNIPWALDSA 384
           EIDS+CS RG +D  E+++R+K+E L+QM GV    +ND+    V++LAATN PW +D A
Sbjct: 306 EIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEA 365

Query: 385 IRRRFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAV 564
           +RRR EKRIYI LP A  RAE+ K+S+       D+   +  ++   +EGYSGADI+   
Sbjct: 366 LRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDV---HLEDIADKTEGYSGADITNIC 422

Query: 565 RDALMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLL 744
           RDA ++ +R        RR+ G SP +   +                        S++ L
Sbjct: 423 RDASLMAMR--------RRINGLSPEEIRAL------------------------SKEEL 450

Query: 745 EPCVTFADMKLALSRNKPTVNQKDLEKLIQFTTDFG 852
           +  VT  D++LAL +   +V+  DLEK  ++  +FG
Sbjct: 451 QMPVTRGDLELALKKIAKSVSAADLEKYEKWMVEFG 486

>sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
           A-like 1) (p60 katanin-like 1)
          Length = 490

 Score =  170 bits (431), Expect = 7e-42
 Identities = 112/276 (40%), Positives = 156/276 (56%), Gaps = 7/276 (2%)
 Frame = +1

Query: 46  PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSIIFID 225
           PPGTGK+ LAKAVATE                K+ GESEKLV+ LFE+AR   P+ IFID
Sbjct: 249 PPGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGESEKLVRLLFEMARFYAPTTIFID 307

Query: 226 EIDSLCSNRGDNDS-ESAKRIKTEFLVQMQGVSS--DNDN----VLILAATNIPWALDSA 384
           EIDS+CS RG +D  E+++R+K+E L+QM GV    +ND+    V++LAATN PW +D A
Sbjct: 308 EIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEA 367

Query: 385 IRRRFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAV 564
           +RRR EKRIYI LP A  RAE+ K+++       D+  ++ +E     EGYSGADI+   
Sbjct: 368 LRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAE---KIEGYSGADITNVC 424

Query: 565 RDALMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLL 744
           RDA ++ +R        RR+ G SP +   +                        S++ L
Sbjct: 425 RDASLMAMR--------RRINGLSPEEIRAL------------------------SKEEL 452

Query: 745 EPCVTFADMKLALSRNKPTVNQKDLEKLIQFTTDFG 852
           +  VT  D +LAL +   +V+  DLEK  ++  +FG
Sbjct: 453 QMPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFG 488

>sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1)
           (p60 katanin)
          Length = 491

 Score =  165 bits (417), Expect = 3e-40
 Identities = 110/276 (39%), Positives = 153/276 (55%), Gaps = 7/276 (2%)
 Frame = +1

Query: 46  PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSIIFID 225
           PPGTGK+ LAKAVATE                K+ GESEKLV+ LFE+AR   P+ IFID
Sbjct: 250 PPGTGKTLLAKAVATECKTTFFNVSSSTLTS-KYRGESEKLVRLLFEMARFYSPATIFID 308

Query: 226 EIDSLCSNRGDNDS-ESAKRIKTEFLVQMQGV--SSDNDN----VLILAATNIPWALDSA 384
           EIDS+CS RG ++  E+++R+K E LVQM GV  +S+ND+    V++LAATN PW +D A
Sbjct: 309 EIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEA 368

Query: 385 IRRRFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAV 564
           +RRR EKRIYI LP A  R E+ ++S+       D+   N + +    EGYSGADI+   
Sbjct: 369 LRRRLEKRIYIPLPSAKGREELLRISLRELELADDV---NLASIAENMEGYSGADITNVC 425

Query: 565 RDALMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLL 744
           RDA ++ +R        RR+ G             LTP    +    EM+  T       
Sbjct: 426 RDASLMAMR--------RRIEG-------------LTPEEIRNLSREEMHMPT------- 457

Query: 745 EPCVTFADMKLALSRNKPTVNQKDLEKLIQFTTDFG 852
               T  D ++AL +   +V+  D+E+  ++  +FG
Sbjct: 458 ----TMEDFEMALKKVSKSVSAADIERYEKWIVEFG 489

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,262,166
Number of Sequences: 369166
Number of extensions: 2816392
Number of successful extensions: 11617
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10854
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 14528857050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01030

Planaria EST Database

DrC_01030

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail