Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_A03
(870 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46467|VPS4B_MOUSE Vacuolar sorting protein 4b (SKD1 pro... 366 e-101
sp|O75351|VPS4B_HUMAN Vacuolar sorting protein 4b (SKD1 pro... 363 e-100
sp|Q8VEJ9|VPS4A_MOUSE Vacuolar sorting protein 4a 353 3e-97
sp|Q9UN37|VPS4A_HUMAN Vacuolar sorting protein 4a (SKD2 pro... 351 1e-96
sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double... 303 5e-82
sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated pr... 292 7e-79
sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A... 173 6e-43
sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit... 172 1e-42
sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit... 170 4e-42
sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A... 165 2e-40
>sp|P46467|VPS4B_MOUSE Vacuolar sorting protein 4b (SKD1 protein)
Length = 444
Score = 366 bits (939), Expect = e-101
Identities = 186/276 (67%), Positives = 217/276 (78%)
Frame = +1
Query: 34 IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
+ + PPGTGKSYLAKAVATEA KWLGESEKLVK+LF++ARE KPSI
Sbjct: 171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230
Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
IFIDEIDSLC +R +N+SE+A+RIKTEFLVQMQGV DND +L+L ATNIPW LDSAIRR
Sbjct: 231 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 290
Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
RFEKRIYI LPEA ARA MF+L +G+ Q+ LT +F ELG ++GYSGADISI VRDA
Sbjct: 291 RFEKRIYIPLPEAHARAAMFRLHLGST--QNSLTEADFQELGRKTDGYSGADISIIVRDA 348
Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
LM PVRKVQ+ATHF++VRGPS DP+ IV+DLLTPCSPG PGAIEM W V +KLLEP
Sbjct: 349 LMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPV 408
Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQDG 861
V+ DM +LS KPTVN++DL KL +FT DFGQ+G
Sbjct: 409 VSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQEG 444
>sp|O75351|VPS4B_HUMAN Vacuolar sorting protein 4b (SKD1 protein)
Length = 444
Score = 363 bits (933), Expect = e-100
Identities = 185/276 (67%), Positives = 214/276 (77%)
Frame = +1
Query: 34 IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
+ + PPGTGKSYLAKAVATEA KWLGESEKLVK+LF++ARE KPSI
Sbjct: 171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSI 230
Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
IFIDEIDSLC +R +N+SE+A+RIKTEFLVQMQGV DND +L+L ATNIPW LDSAIRR
Sbjct: 231 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR 290
Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
RFEKRIYI LPE ARA MFKL +G Q+ LT +F ELG ++GYSGADISI VRDA
Sbjct: 291 RFEKRIYIPLPEPHARAAMFKLHLGTT--QNSLTEADFRELGRKTDGYSGADISIIVRDA 348
Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
LM PVRKVQ+ATHF++VRGPS DP+ +V DLLTPCSPG PGAIEM W V +KLLEP
Sbjct: 349 LMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPV 408
Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQDG 861
V+ +DM +LS KPTVN+ DL KL +FT DFGQ+G
Sbjct: 409 VSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQEG 444
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar sorting protein 4a
Length = 437
Score = 353 bits (907), Expect = 3e-97
Identities = 177/275 (64%), Positives = 213/275 (77%)
Frame = +1
Query: 34 IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
+ + PPGTGKSYLAKAVATEA KWLGESEKLVK+LFE+AR+ KPSI
Sbjct: 164 LLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSI 223
Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
IFIDE+DSLC +R +N+SE+A+RIKTEFLVQMQGV ++ND L+L ATNIPW LDSAIRR
Sbjct: 224 IFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR 283
Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
RFEKRIYI LPE ARA+MF+L +G+ P H+LT N EL +EGYSGADISI VRD+
Sbjct: 284 RFEKRIYIPLPEEAARAQMFRLHLGSTP--HNLTDANIHELARKTEGYSGADISIIVRDS 341
Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
LM PVRKVQ+ATHF++V GPS T+PSV++ DLLTPCSPG PGAIEM W V +KLLEP
Sbjct: 342 LMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPV 401
Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQD 858
V +DM +L+ +PTVN DL K+ +F+ DFGQ+
Sbjct: 402 VCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
>sp|Q9UN37|VPS4A_HUMAN Vacuolar sorting protein 4a (SKD2 protein) (hVPS4) (VPS4-1)
Length = 437
Score = 351 bits (901), Expect = 1e-96
Identities = 175/275 (63%), Positives = 213/275 (77%)
Frame = +1
Query: 34 IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
+ + PPGTGKSYLAKAVATEA KWLGESEKLVK+LFE+AR+ KPSI
Sbjct: 164 LLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSI 223
Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
IFIDE+DSLC +R +N+SE+A+RIKTEFLVQMQGV ++ND L+L ATNIPW LDSAIRR
Sbjct: 224 IFIDEVDSLCGSRNENESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRR 283
Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
RFEKRIYI LPE ARA+MF+L +G+ P H+LT N EL +EGYSGADISI VRD+
Sbjct: 284 RFEKRIYIPLPEEAARAQMFRLHLGSTP--HNLTDANIHELARKTEGYSGADISIIVRDS 341
Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
LM PVRKVQ+ATHF++V GPS T+PS+++ DLLTPCSPG PGA+EM W V +KLLEP
Sbjct: 342 LMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPV 401
Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQD 858
V +DM +L+ +PTVN DL K+ +F+ DFGQ+
Sbjct: 402 VCMSDMLRSLATTRPTVNADDLLKVKKFSEDFGQE 436
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
Length = 432
Score = 303 bits (775), Expect = 5e-82
Identities = 158/276 (57%), Positives = 194/276 (70%)
Frame = +1
Query: 34 IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
+ Y PPGTGKSYLAKAVATEA KW+GESE+LV+ LFE+ARE+KPSI
Sbjct: 166 LLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVS-KWMGESERLVRQLFEMAREQKPSI 224
Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
IFIDEIDSLC +R + +SES++RIKTEFLVQM GV D VL+L ATNIPW LDSAIRR
Sbjct: 225 IFIDEIDSLCGSRSEGESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRR 284
Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
RFEKRIYI LP A ARA MF+L++G P +LT Q+F EL +++GYSG+DISI VRDA
Sbjct: 285 RFEKRIYIPLPNAHARARMFELNVGKIPS--ELTSQDFKELAKMTDGYSGSDISIVVRDA 342
Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
+M PVR++ TATHF+ V L+TPCSPG P A E +W V+ E ++EP
Sbjct: 343 IMEPVRRIHTATHFKEVYDNKSN------RTLVTPCSPGDPDAFESSWLEVNPEDIMEPK 396
Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQDG 861
+T D A+ + KPT+N D+EK QFT DFG +G
Sbjct: 397 LTVRDFYSAVRKVKPTLNAGDIEKHTQFTKDFGAEG 432
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein VPS4 (END13 protein)
(DOA4-independent degradation protein 6)
Length = 437
Score = 292 bits (748), Expect = 7e-79
Identities = 152/276 (55%), Positives = 197/276 (71%)
Frame = +1
Query: 34 IFY*PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSI 213
+ Y PPGTGKSYLAKAVATEA KW+GESEKLVK LF +ARE KPSI
Sbjct: 170 LLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGESEKLVKQLFAMARENKPSI 228
Query: 214 IFIDEIDSLCSNRGDNDSESAKRIKTEFLVQMQGVSSDNDNVLILAATNIPWALDSAIRR 393
IFIDE+D+L RG+ +SE+++RIKTE LVQM GV +D+ VL+L ATNIPW LDSAIRR
Sbjct: 229 IFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR 288
Query: 394 RFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAVRDA 573
RFE+RIYI LP+ AR MF++++G+ P LT +++ LG ++EGYSG+DI++ V+DA
Sbjct: 289 RFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVVKDA 346
Query: 574 LMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPC 753
LM P+RK+Q+ATHF+ V S D + LTPCSPG GAIEM+W +++++L EP
Sbjct: 347 LMQPIRKIQSATHFKDV---STEDDE---TRKLTPCSPGDDGAIEMSWTDIEADELKEPD 400
Query: 754 VTFADMKLALSRNKPTVNQKDLEKLIQFTTDFGQDG 861
+T D A+ +PTVN+ DL K QFT DFGQ+G
Sbjct: 401 LTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 436
>sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
A-like 1) (p60 katanin-like 1)
Length = 488
Score = 173 bits (438), Expect = 6e-43
Identities = 112/276 (40%), Positives = 157/276 (56%), Gaps = 7/276 (2%)
Frame = +1
Query: 46 PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSIIFID 225
PPGTGK+ LAKAVATE K+ GESEKLV+ LFE+AR P+ IFID
Sbjct: 247 PPGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGESEKLVRLLFEMARFYAPTTIFID 305
Query: 226 EIDSLCSNRGDNDS-ESAKRIKTEFLVQMQGVSS--DNDN----VLILAATNIPWALDSA 384
EIDS+CS RG +D E+++R+K+E L+QM GV +ND+ V++LAATN PW +D A
Sbjct: 306 EIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEA 365
Query: 385 IRRRFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAV 564
+RRR EKRIYI LP A RAE+ K+S+ D+ + ++ +EGYSGADI+
Sbjct: 366 LRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDI---HLEDIAEKTEGYSGADITNIC 422
Query: 565 RDALMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLL 744
RDA ++ +R RR+ G SP + + S++ L
Sbjct: 423 RDASLMAMR--------RRINGLSPEEIRAL------------------------SKEEL 450
Query: 745 EPCVTFADMKLALSRNKPTVNQKDLEKLIQFTTDFG 852
+ VT D++LAL + +V+ DLEK ++ +FG
Sbjct: 451 QMPVTRGDLELALKKIAKSVSAADLEKYEKWMVEFG 486
>sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
A-like 1) (p60 katanin-like 1)
Length = 488
Score = 172 bits (436), Expect = 1e-42
Identities = 112/276 (40%), Positives = 157/276 (56%), Gaps = 7/276 (2%)
Frame = +1
Query: 46 PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSIIFID 225
PPGTGK+ LAKAVATE K+ GESEKLV+ LFE+AR P+ IFID
Sbjct: 247 PPGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGESEKLVRLLFEMARFYAPTTIFID 305
Query: 226 EIDSLCSNRGDNDS-ESAKRIKTEFLVQMQGVSS--DNDN----VLILAATNIPWALDSA 384
EIDS+CS RG +D E+++R+K+E L+QM GV +ND+ V++LAATN PW +D A
Sbjct: 306 EIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEA 365
Query: 385 IRRRFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAV 564
+RRR EKRIYI LP A RAE+ K+S+ D+ + ++ +EGYSGADI+
Sbjct: 366 LRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDV---HLEDIADKTEGYSGADITNIC 422
Query: 565 RDALMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLL 744
RDA ++ +R RR+ G SP + + S++ L
Sbjct: 423 RDASLMAMR--------RRINGLSPEEIRAL------------------------SKEEL 450
Query: 745 EPCVTFADMKLALSRNKPTVNQKDLEKLIQFTTDFG 852
+ VT D++LAL + +V+ DLEK ++ +FG
Sbjct: 451 QMPVTRGDLELALKKIAKSVSAADLEKYEKWMVEFG 486
>sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 (Katanin p60 subunit
A-like 1) (p60 katanin-like 1)
Length = 490
Score = 170 bits (431), Expect = 4e-42
Identities = 112/276 (40%), Positives = 156/276 (56%), Gaps = 7/276 (2%)
Frame = +1
Query: 46 PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSIIFID 225
PPGTGK+ LAKAVATE K+ GESEKLV+ LFE+AR P+ IFID
Sbjct: 249 PPGTGKTMLAKAVATECGTTFFNVSSSTLTS-KYRGESEKLVRLLFEMARFYAPTTIFID 307
Query: 226 EIDSLCSNRGDNDS-ESAKRIKTEFLVQMQGVSS--DNDN----VLILAATNIPWALDSA 384
EIDS+CS RG +D E+++R+K+E L+QM GV +ND+ V++LAATN PW +D A
Sbjct: 308 EIDSICSRRGTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEA 367
Query: 385 IRRRFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAV 564
+RRR EKRIYI LP A RAE+ K+++ D+ ++ +E EGYSGADI+
Sbjct: 368 LRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAE---KIEGYSGADITNVC 424
Query: 565 RDALMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLL 744
RDA ++ +R RR+ G SP + + S++ L
Sbjct: 425 RDASLMAMR--------RRINGLSPEEIRAL------------------------SKEEL 452
Query: 745 EPCVTFADMKLALSRNKPTVNQKDLEKLIQFTTDFG 852
+ VT D +LAL + +V+ DLEK ++ +FG
Sbjct: 453 QMPVTKGDFELALKKIAKSVSAADLEKYEKWMVEFG 488
>sp|Q6E0V2|KTNA1_RAT Katanin p60 ATPase-containing subunit A1 (Katanin p60 subunit A1)
(p60 katanin)
Length = 491
Score = 165 bits (417), Expect = 2e-40
Identities = 110/276 (39%), Positives = 153/276 (55%), Gaps = 7/276 (2%)
Frame = +1
Query: 46 PPGTGKSYLAKAVATEAXXXXXXXXXXXXXXXKWLGESEKLVKSLFEVAREKKPSIIFID 225
PPGTGK+ LAKAVATE K+ GESEKLV+ LFE+AR P+ IFID
Sbjct: 250 PPGTGKTLLAKAVATECKTTFFNVSSSTLTS-KYRGESEKLVRLLFEMARFYSPATIFID 308
Query: 226 EIDSLCSNRGDNDS-ESAKRIKTEFLVQMQGV--SSDNDN----VLILAATNIPWALDSA 384
EIDS+CS RG ++ E+++R+K E LVQM GV +S+ND+ V++LAATN PW +D A
Sbjct: 309 EIDSICSRRGTSEEHEASRRVKAELLVQMDGVGGASENDDPSKMVMVLAATNFPWDIDEA 368
Query: 385 IRRRFEKRIYIALPEAGARAEMFKLSMGNKPGQHDLTPQNFSELGHLSEGYSGADISIAV 564
+RRR EKRIYI LP A R E+ ++S+ D+ N + + EGYSGADI+
Sbjct: 369 LRRRLEKRIYIPLPSAKGREELLRISLRELELADDV---NLASIAENMEGYSGADITNVC 425
Query: 565 RDALMVPVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLL 744
RDA ++ +R RR+ G LTP + EM+ T
Sbjct: 426 RDASLMAMR--------RRIEG-------------LTPEEIRNLSREEMHMPT------- 457
Query: 745 EPCVTFADMKLALSRNKPTVNQKDLEKLIQFTTDFG 852
T D ++AL + +V+ D+E+ ++ +FG
Sbjct: 458 ----TMEDFEMALKKVSKSVSAADIERYEKWIVEFG 489
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,302,262
Number of Sequences: 369166
Number of extensions: 2198264
Number of successful extensions: 8764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8243
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)