Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_005_N06 (703 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P46467|VPS4B_MOUSE Vacuolar sorting protein 4b (SKD1 pro... 127 2e-29 sp|O75351|VPS4B_HUMAN Vacuolar sorting protein 4b (SKD1 pro... 127 4e-29 sp|Q8VEJ9|VPS4A_MOUSE Vacuolar sorting protein 4a 119 6e-27 sp|Q9UN37|VPS4A_HUMAN Vacuolar sorting protein 4a (SKD2 pro... 117 3e-26 sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated pr... 85 2e-16 sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double... 79 9e-15 sp|Q26366|VG_DROME Vestigial protein 36 0.086 sp|Q9PUB8|KE4_BRARE Zinc transporter Slc39a7 (Solute carrie... 34 0.43 sp|P26410|HYPB_RHOCA Hydrogenase nickel incorporation prote... 33 0.56 sp|Q8N441|FGRL1_HUMAN Fibroblast growth factor receptor-lik... 33 0.56
>sp|P46467|VPS4B_MOUSE Vacuolar sorting protein 4b (SKD1 protein) Length = 444 Score = 127 bits (320), Expect = 2e-29 Identities = 61/91 (67%), Positives = 72/91 (79%) Frame = +1 Query: 25 PVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPCVTF 204 PVRKVQ+ATHF++VRGPS DP+ IV+DLLTPCSPG PGAIEM W V +KLLEP V+ Sbjct: 352 PVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSM 411 Query: 205 ADMKLALSRNKPTVNQKDLEKLIQFTTDFGQ 297 DM +LS KPTVN++DL KL +FT DFGQ Sbjct: 412 WDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQ 442
>sp|O75351|VPS4B_HUMAN Vacuolar sorting protein 4b (SKD1 protein) Length = 444 Score = 127 bits (318), Expect = 4e-29 Identities = 60/91 (65%), Positives = 71/91 (78%) Frame = +1 Query: 25 PVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPCVTF 204 PVRKVQ+ATHF++VRGPS DP+ +V DLLTPCSPG PGAIEM W V +KLLEP V+ Sbjct: 352 PVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSM 411 Query: 205 ADMKLALSRNKPTVNQKDLEKLIQFTTDFGQ 297 +DM +LS KPTVN+ DL KL +FT DFGQ Sbjct: 412 SDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 442
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar sorting protein 4a Length = 437 Score = 119 bits (299), Expect = 6e-27 Identities = 56/91 (61%), Positives = 70/91 (76%) Frame = +1 Query: 25 PVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPCVTF 204 PVRKVQ+ATHF++V GPS T+PSV++ DLLTPCSPG PGAIEM W V +KLLEP V Sbjct: 345 PVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVCM 404 Query: 205 ADMKLALSRNKPTVNQKDLEKLIQFTTDFGQ 297 +DM +L+ +PTVN DL K+ +F+ DFGQ Sbjct: 405 SDMLRSLATTRPTVNADDLLKVKKFSEDFGQ 435
>sp|Q9UN37|VPS4A_HUMAN Vacuolar sorting protein 4a (SKD2 protein) (hVPS4) (VPS4-1) Length = 437 Score = 117 bits (293), Expect = 3e-26 Identities = 54/91 (59%), Positives = 70/91 (76%) Frame = +1 Query: 25 PVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPCVTF 204 PVRKVQ+ATHF++V GPS T+PS+++ DLLTPCSPG PGA+EM W V +KLLEP V Sbjct: 345 PVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVPGDKLLEPVVCM 404 Query: 205 ADMKLALSRNKPTVNQKDLEKLIQFTTDFGQ 297 +DM +L+ +PTVN DL K+ +F+ DFGQ Sbjct: 405 SDMLRSLATTRPTVNADDLLKVKKFSEDFGQ 435
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein VPS4 (END13 protein) (DOA4-independent degradation protein 6) Length = 437 Score = 85.1 bits (209), Expect = 2e-16 Identities = 44/91 (48%), Positives = 59/91 (64%) Frame = +1 Query: 25 PVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPCVTF 204 P+RK+Q+ATHF+ V S D + LTPCSPG GAIEM+W +++++L EP +T Sbjct: 350 PIRKIQSATHFKDV---STEDDE---TRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTI 403 Query: 205 ADMKLALSRNKPTVNQKDLEKLIQFTTDFGQ 297 D A+ +PTVN+ DL K QFT DFGQ Sbjct: 404 KDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 434
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants Length = 432 Score = 79.3 bits (194), Expect = 9e-15 Identities = 40/90 (44%), Positives = 53/90 (58%) Frame = +1 Query: 25 PVRKVQTATHFRRVRGPSPTDPSVIVSDLLTPCSPGSPGAIEMNWQTVDSEKLLEPCVTF 204 PVR++ TATHF+ V L+TPCSPG P A E +W V+ E ++EP +T Sbjct: 346 PVRRIHTATHFKEVYDNKSN------RTLVTPCSPGDPDAFESSWLEVNPEDIMEPKLTV 399 Query: 205 ADMKLALSRNKPTVNQKDLEKLIQFTTDFG 294 D A+ + KPT+N D+EK QFT DFG Sbjct: 400 RDFYSAVRKVKPTLNAGDIEKHTQFTKDFG 429
>sp|Q26366|VG_DROME Vestigial protein Length = 453 Score = 36.2 bits (82), Expect = 0.086 Identities = 15/28 (53%), Positives = 18/28 (64%) Frame = -2 Query: 600 LTASHAHTHAHNLVHSEPQAHQHAHTHT 517 L +SH THAH+L H+ H H HTHT Sbjct: 150 LHSSH-RTHAHSLAHAHTHPHSHTHTHT 176
>sp|Q9PUB8|KE4_BRARE Zinc transporter Slc39a7 (Solute carrier family 39 member 7) (Histidine-rich membrane protein Ke4) Length = 352 Score = 33.9 bits (76), Expect = 0.43 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -2 Query: 612 HLYILTASHAHTHAHNLVHSEPQAHQHAHTH 520 H + H H H+H +H AH+H H H Sbjct: 73 HTHDHAHDHGHAHSHGDIHDHGHAHKHGHAH 103
Score = 30.8 bits (68), Expect = 3.6 Identities = 11/31 (35%), Positives = 14/31 (45%) Frame = -2 Query: 612 HLYILTASHAHTHAHNLVHSEPQAHQHAHTH 520 H++ +H H H H HS H H H H Sbjct: 67 HVHDHGHTHDHAHDHGHAHSHGDIHDHGHAH 97
>sp|P26410|HYPB_RHOCA Hydrogenase nickel incorporation protein hypB Length = 335 Score = 33.5 bits (75), Expect = 0.56 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -2 Query: 591 SHAHTHAHNLVHSEPQAHQHAH 526 SH HTHA H+ P AH H+H Sbjct: 49 SHWHTHADGTSHAHPHAHSHSH 70
Score = 31.6 bits (70), Expect = 2.1 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -2 Query: 591 SHAHTHAHNLVHSEPQAHQHAHTHT 517 SH+H+H H AH HAH+H+ Sbjct: 45 SHSHSHWHTHADGTSHAHPHAHSHS 69
Score = 30.8 bits (68), Expect = 3.6 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -2 Query: 588 HAHTHAHNLVHSEPQAHQHAHTHT 517 H+H+H+H H++ +H H H H+ Sbjct: 44 HSHSHSHWHTHADGTSHAHPHAHS 67
Score = 30.4 bits (67), Expect = 4.7 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 10/42 (23%) Frame = -2 Query: 612 HLYILTASHAHTHAHNLVHS----------EPQAHQHAHTHT 517 H + SHAH HAH+ H+ P AH H H H+ Sbjct: 52 HTHADGTSHAHPHAHSHSHAAGHGAEADSDHPHAHGHDHGHS 93
>sp|Q8N441|FGRL1_HUMAN Fibroblast growth factor receptor-like 1 precursor (FGF receptor-like protein 1) (Fibroblast growth factor receptor 5) (FGFR-like protein) (FGF homologous factor receptor) Length = 504 Score = 33.5 bits (75), Expect = 0.56 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 609 LYILTASHAHTHAHNLVHSEPQAHQHAH 526 LY +H HTH+H H E + HQH H Sbjct: 474 LYTDIHTHTHTHSHTHSHVEGKVHQHIH 501
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,938,324 Number of Sequences: 369166 Number of extensions: 1553375 Number of successful extensions: 5897 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5653 length of database: 68,354,980 effective HSP length: 107 effective length of database: 48,588,335 effective search space used: 6122130210 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)