Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_I21
(135 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46467|VPS4B_MOUSE Vacuolar sorting protein 4b (SKD1 pro... 34 0.091
sp|O75351|VPS4B_HUMAN Vacuolar sorting protein 4b (SKD1 pro... 33 0.15
sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated pr... 32 0.59
sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double... 31 1.0
sp|Q9UN37|VPS4A_HUMAN Vacuolar sorting protein 4a (SKD2 pro... 28 5.0
sp|Q8VEJ9|VPS4A_MOUSE Vacuolar sorting protein 4a 28 5.0
>sp|P46467|VPS4B_MOUSE Vacuolar sorting protein 4b (SKD1 protein)
Length = 444
Score = 34.3 bits (77), Expect = 0.091
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 1 KPTVNQKDLEKLIQFTTDFGQ 63
KPTVN++DL KL +FT DFGQ
Sbjct: 422 KPTVNEQDLLKLKKFTEDFGQ 442
>sp|O75351|VPS4B_HUMAN Vacuolar sorting protein 4b (SKD1 protein)
Length = 444
Score = 33.5 bits (75), Expect = 0.15
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 1 KPTVNQKDLEKLIQFTTDFGQ 63
KPTVN+ DL KL +FT DFGQ
Sbjct: 422 KPTVNEHDLLKLKKFTEDFGQ 442
>sp|P52917|VPS4_YEAST Vacuolar protein sorting-associated protein VPS4 (END13 protein)
(DOA4-independent degradation protein 6)
Length = 437
Score = 31.6 bits (70), Expect = 0.59
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 1 KPTVNQKDLEKLIQFTTDFGQ 63
+PTVN+ DL K QFT DFGQ
Sbjct: 414 RPTVNEDDLLKQEQFTRDFGQ 434
>sp|Q09803|VPS4_SCHPO Suppressor protein of bem1/bed5 double mutants
Length = 432
Score = 30.8 bits (68), Expect = 1.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 1 KPTVNQKDLEKLIQFTTDFG 60
KPT+N D+EK QFT DFG
Sbjct: 410 KPTLNAGDIEKHTQFTKDFG 429
>sp|Q9UN37|VPS4A_HUMAN Vacuolar sorting protein 4a (SKD2 protein) (hVPS4) (VPS4-1)
Length = 437
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 1 KPTVNQKDLEKLIQFTTDFGQ 63
+PTVN DL K+ +F+ DFGQ
Sbjct: 415 RPTVNADDLLKVKKFSEDFGQ 435
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar sorting protein 4a
Length = 437
Score = 28.5 bits (62), Expect = 5.0
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 1 KPTVNQKDLEKLIQFTTDFGQ 63
+PTVN DL K+ +F+ DFGQ
Sbjct: 415 RPTVNADDLLKVKKFSEDFGQ 435
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,954,669
Number of Sequences: 369166
Number of extensions: 110147
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 68,354,980
effective HSP length: 18
effective length of database: 65,029,750
effective search space used: 1690773500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)