Planaria EST Database

DrC_00872

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00872
         (1411 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38691|KSP1_YEAST  Serine/threonine-protein kinase KSP1         42   0.006
sp|Q8CST4|IF2_STAES  Translation initiation factor IF-2 >gi|...    41   0.007
sp|Q17060|MRJP3_APIME  Major royal jelly protein 3 precursor...    40   0.021
sp|Q9Y2W1|TR150_HUMAN  Thyroid hormone receptor-associated p...    39   0.028
sp|P25339|PUF4_YEAST  PUF4 protein                                 39   0.037
sp|Q8WXA9|SFR12_HUMAN  Splicing factor, arginine/serine-rich...    37   0.11 
sp|Q5UP41|YR871_MIMIV  Hypothetical protein R871                   37   0.11 
sp|P36168|YK76_YEAST  Hypothetical 137.5 kDa protein in MPL1...    37   0.18 
sp|Q8JFN7|ACH91_ONCMY  Neuronal acetylcholine receptor prote...    37   0.18 
sp|P40467|YIN0_YEAST  Putative 108.8 kDa transcriptional reg...    36   0.24 

>sp|P38691|KSP1_YEAST Serine/threonine-protein kinase KSP1
          Length = 1029

 Score = 41.6 bits (96), Expect = 0.006
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +1

Query: 151 RDPYKRRE---PKKHENKYRTSRYKSNNKRDRSSNHYYQPSNHGNYNHNRKKNDMKDNED 321
           RD +  R+   P   +++Y      +NNK+ R + +Y   +N+ N NH    N+  +   
Sbjct: 516 RDEFNTRDFFTPPSVQHRYMEGFSNNNNKQYRQNRNYNNNNNNSNNNHGSNYNNFNNGNS 575

Query: 322 YERPSKKNSYEKRKPVKQNNYYGDSQM 402
           Y +   KN  + R+P   ++Y G S +
Sbjct: 576 YIKGWNKNFNKYRRP-SSSSYTGKSPL 601


 Score = 30.8 bits (68), Expect = 10.0
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 184 HENKYRTSRYKSNNKRDRSSNHYYQPSNHGNYNHNRK--KNDMKDNEDYERPSKKNSYEK 357
           +  +YR +R   NN  + S+N++   SN+ N+N+     K   K+   Y RPS  +SY  
Sbjct: 542 NNKQYRQNR-NYNNNNNNSNNNH--GSNYNNFNNGNSYIKGWNKNFNKYRRPS-SSSYTG 597

Query: 358 RKPVKQNN 381
           + P+ + N
Sbjct: 598 KSPLSRYN 605

>sp|Q8CST4|IF2_STAES Translation initiation factor IF-2
 sp|Q5HPS2|IF2_STAEQ Translation initiation factor IF-2
          Length = 720

 Score = 41.2 bits (95), Expect = 0.007
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
 Frame = +1

Query: 178 KKHENKYRTSRYKSNNKRDRSSNHYYQPSNHGNYNHNRKKNDMKDNEDYERPSKKNSYE- 354
           K  + K++ S+ K  NK++  +NH  Q SN+   +++++K   K+N    +P+KK     
Sbjct: 44  KALDKKFKASQAKDTNKQNTQNNH--QKSNNKQNSNDKEKQQSKNNS---KPTKKKEQNN 98

Query: 355 KRKPVKQNNYYGDSQMDNKKPAEIKRQSKN 444
           K K   +NN    +Q +NK     K+ +KN
Sbjct: 99  KGKQQNKNNKTNKNQKNNKN----KKNNKN 124

>sp|Q17060|MRJP3_APIME Major royal jelly protein 3 precursor (MRJP-3) (Bee-milk protein)
           (Royal jelly protein RJP57-1)
          Length = 544

 Score = 39.7 bits (91), Expect = 0.021
 Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +1

Query: 163 KRREPKKHENKYRTSRYKSNNKRDRSSNHYYQPSN--HGNYNHNRKKNDMKDNEDYERPS 336
           K+   ++++N+   ++   N + D   N   Q  N  +GN  +  K+ND K N + +  +
Sbjct: 454 KQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDN 513

Query: 337 KKNSYEKRKPVKQNNYYGDSQMDNK 411
           K+N    R+   QNN   +++ DN+
Sbjct: 514 KRNG--NRQNDNQNNQNDNNRNDNQ 536


 Score = 34.7 bits (78), Expect = 0.69
 Identities = 22/88 (25%), Positives = 42/88 (47%)
 Frame = +1

Query: 181 KHENKYRTSRYKSNNKRDRSSNHYYQPSNHGNYNHNRKKNDMKDNEDYERPSKKNSYEKR 360
           ++ NK   +R   N + D   N        GN  ++ K+N  + N++ +  +++N   K+
Sbjct: 450 QNANKQNGNRQNDNRQNDNKQN--------GNRQNDNKQNGNRQNDNKQNGNRQNG-NKQ 500

Query: 361 KPVKQNNYYGDSQMDNKKPAEIKRQSKN 444
              KQN   G+ Q DNK+    +  ++N
Sbjct: 501 NDNKQN---GNRQNDNKRNGNRQNDNQN 525


 Score = 32.0 bits (71), Expect = 4.5
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +1

Query: 217 SNNKRDRSSNHYYQPSNHGNYNHNRKKNDMKDNEDYERPSKKNSYEKRKPVKQ--NNYYG 390
           + N  ++++++      +GN  ++ ++ND K N + +  +K+N   ++   KQ  N   G
Sbjct: 439 NQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNG-NRQNDNKQNGNRQNG 497

Query: 391 DSQMDNKKPAEIKRQSK 441
           + Q DNK+    +  +K
Sbjct: 498 NKQNDNKQNGNRQNDNK 514

>sp|Q9Y2W1|TR150_HUMAN Thyroid hormone receptor-associated protein complex 150 kDa
           component (Trap150) (Thyroid hormone receptor associated
           protein 3)
          Length = 955

 Score = 39.3 bits (90), Expect = 0.028
 Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +1

Query: 163 KRREPKKHENKYRTSRYKSNNKRDRSSNHYYQPSNHGNYNHNRKKN--DMKDNEDYERPS 336
           KRR P      +  +  KS++ R R S+     SNH     +++K+  + K +    RPS
Sbjct: 131 KRRSPSPRSRSHSRNSDKSSSDRSRRSSSSRSSSNHSRVESSKRKSAKEKKSSSKDSRPS 190

Query: 337 KKNSYEKRKPVKQNNYYGDSQMDNK 411
           +     +   VK+  + G +  D K
Sbjct: 191 QAAGDNQGDEVKEQTFSGGTSQDTK 215

>sp|P25339|PUF4_YEAST PUF4 protein
          Length = 888

 Score = 38.9 bits (89), Expect = 0.037
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = +1

Query: 184 HENKYRTSRYKSNNKRDRSSN----HYYQPSNHGNYNHNRKKNDMKDNEDYERPSKKNSY 351
           H +         NNK    SN       + S HG YN+N   N+  +N +    +  NS 
Sbjct: 485 HNDNDNIGNSNYNNKDTGRSNVGKMKNMKNSYHGYYNNNNNNNNNNNNNNNSNATNSNSA 544

Query: 352 EKRKPVKQNNYYGDSQMD 405
           EK++ +++++ + D+ +D
Sbjct: 545 EKQRKIEESSRFADAVLD 562

>sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
           splicing regulatory protein 86) (SRrp86) (Splicing
           regulatory protein 508) (SRrp508)
          Length = 508

 Score = 37.4 bits (85), Expect = 0.11
 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +1

Query: 178 KKHENKYRTSRYKSNNKRDRSSNHYYQPSNHGNYNHNRKKNDMKDNEDYERPSKKNSYEK 357
           + H      S  KS+++R RS       S H + +HNR ++  KD    + P KK S  +
Sbjct: 193 RSHTRSKSRSSSKSHSRRKRSQ------SKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSR 246

Query: 358 -RKPVKQNNYYGDSQMDNKKPAEIKRQSK 441
            R+  +  ++  D + D ++  + K + K
Sbjct: 247 ERRKSRSRSHSRDKRKDTREKIKEKERVK 275

>sp|Q5UP41|YR871_MIMIV Hypothetical protein R871
          Length = 561

 Score = 37.4 bits (85), Expect = 0.11
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +1

Query: 151 RDPYKRREPKKHEN--KYRTSRYKSNNKRDRSSNHYYQPSNHGNYNHNRKKNDMKDNEDY 324
           + P + R PK+H++  K+++S+   ++K D+SS        H ++    KK D    + Y
Sbjct: 129 KSPSRGRSPKRHKSSKKHKSSKKHKSSKHDKSSKRDKSSKRHKSH----KKKDKSHKKRY 184

Query: 325 ERPSKKNSYEKRKPVKQNNYY 387
             PS   S  + +   ++  Y
Sbjct: 185 RSPSSDRSLSRDRSSSRDRSY 205

>sp|P36168|YK76_YEAST Hypothetical 137.5 kDa protein in MPL1-PPC1 intergenic region
          Length = 1195

 Score = 36.6 bits (83), Expect = 0.18
 Identities = 21/85 (24%), Positives = 40/85 (47%)
 Frame = +1

Query: 178 KKHENKYRTSRYKSNNKRDRSSNHYYQPSNHGNYNHNRKKNDMKDNEDYERPSKKNSYEK 357
           ++  N  +    K N+ RD+  N+    +N+ N++ N   N+  +N+D    +  NS + 
Sbjct: 188 QRKSNNSQEINDKDNSARDQDFNNSGNNNNNNNHSSNNNDNNNNNNDDNNNNNNSNSRDN 247

Query: 358 RKPVKQNNYYGDSQMDNKKPAEIKR 432
                 +N   ++  D+ KPA  KR
Sbjct: 248 NNNSDDSNEREEN--DSCKPASNKR 270

>sp|Q8JFN7|ACH91_ONCMY Neuronal acetylcholine receptor protein, alpha-9-I subunit
           precursor (Nicotinic acetylcholine receptor subunit
           alpha 9-I) (NACHR alpha 9-I)
          Length = 572

 Score = 36.6 bits (83), Expect = 0.18
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +1

Query: 184 HENKYRTSRYKSNNKRDRSSNHYYQPSNHGNYNHNRKKNDMKDNEDYERPSKKNSYEKRK 363
           H+N     RY +   RD   +HY   SN  N NH+  ++     E  E        EKR+
Sbjct: 414 HQNHLDNCRYANGGHRD---DHY---SNRSNQNHHSNRSQTSKGEGGE--------EKRE 459

Query: 364 PVKQNNYYGDSQMDNKKP 417
           P++  ++ G  ++D + P
Sbjct: 460 PLRHYHHIGREELDYQAP 477

>sp|P40467|YIN0_YEAST Putative 108.8 kDa transcriptional regulatory protein in FKH1-STH1
            intergenic region
          Length = 964

 Score = 36.2 bits (82), Expect = 0.24
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
 Frame = +1

Query: 175  PKKHENKYRTSRYKSNNKR---DRSSNHYYQPSNHGNYNHNRKKNDMKDNEDYERPSKKN 345
            P    N Y     K+NN     + S+N++   +N  N N+N   N+  +N +    S  N
Sbjct: 818  PDTINNNYNNVSGKNNNNNNITNNSNNNHNNNNNDNNNNNNNNNNNNNNNNNSGNSSNNN 877

Query: 346  SYEKRKPVKQNNYYGDSQMDNKKPA 420
            +       K NN +G  ++DN  P+
Sbjct: 878  NNNNNN--KNNNDFG-IKIDNNSPS 899


 Score = 35.8 bits (81), Expect = 0.31
 Identities = 19/84 (22%), Positives = 38/84 (45%)
 Frame = +1

Query: 184  HENKYRTSRYKSNNKRDRSSNHYYQPSNHGNYNHNRKKNDMKDNEDYERPSKKNSYEKRK 363
            + N    +   +NN  + ++N     +N+ N N+N+  ND     D   PS +   + + 
Sbjct: 849  NNNDNNNNNNNNNNNNNNNNNSGNSSNNNNNNNNNKNNNDFGIKIDNNSPSYEGFPQLQI 908

Query: 364  PVKQNNYYGDSQMDNKKPAEIKRQ 435
            P+ Q+N   + + +     EIK +
Sbjct: 909  PLSQDNLNIEDKEEMSPNIEIKNE 932

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,044,130
Number of Sequences: 369166
Number of extensions: 1135867
Number of successful extensions: 5071
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4648
length of database: 68,354,980
effective HSP length: 114
effective length of database: 47,295,190
effective search space used: 16789792450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00872

  1. Dr_sW_023_O18
  2. Dr_sW_022_A17
  3. Dr_sW_015_A01
  4. Dr_sW_015_L18
  5. Dr_sW_027_A05
  6. Dr_sW_018_E19
  7. Dr_sW_011_D18
  8. Dr_sW_008_D22
  9. Dr_sW_006_J01
  10. Dr_sW_011_G18
  11. Dr_sW_006_A05
  12. Dr_sW_014_N24
  13. Dr_sW_002_F16
  14. Dr_sW_021_N02
  15. Dr_sW_004_P11