Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_D18
(153 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34338|YK14_CAEEL Hypothetical protein C15H7.4 in chromo... 31 0.79
sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding prot... 28 6.7
sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding prot... 28 6.7
sp|P53626|E13B_TRIHA Glucan endo-1,3-beta-glucosidase BGN13... 28 8.7
>sp|P34338|YK14_CAEEL Hypothetical protein C15H7.4 in chromosome III
Length = 327
Score = 31.2 bits (69), Expect = 0.79
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +2
Query: 11 PSKKNSYEKRKPVKQNNYYGDSQMDNKKPAEIKRQSKNPYKT 136
PS+K S EK+K V N GD ++NKK ++ + K P KT
Sbjct: 165 PSEKGSNEKKKEVVPNG--GDKSVENKKGSD-RNVKKTPSKT 203
>sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1 (CHD-1)
Length = 1711
Score = 28.1 bits (61), Expect = 6.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 23 NSYEKRKPVKQNNYYGDSQMDN--KKPAEIKRQSKN 124
N++E + +KQ N G ++DN KK E KR KN
Sbjct: 328 NTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKN 363
>sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1 (CHD-1)
Length = 1709
Score = 28.1 bits (61), Expect = 6.7
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 23 NSYEKRKPVKQNNYYGDSQMDN--KKPAEIKRQSKN 124
N++E + +KQ N G ++DN KK E KR KN
Sbjct: 330 NTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLKN 365
>sp|P53626|E13B_TRIHA Glucan endo-1,3-beta-glucosidase BGN13.1 precursor
((1->3)-beta-glucan endohydrolase BGN13.1)
((1->3)-beta-glucanase BGN13.1) (Basic
beta-1,3-endoglucanase BGN13.1)
Length = 762
Score = 27.7 bits (60), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 14 SKKNSYEKRKPVKQNNYYGDSQMDNKKPAEIKRQSKNPYKTP 139
S N+Y V +N YGD N +P+ + + PY P
Sbjct: 334 SHVNTYSYGNTVGRNPTYGDVTSSNTRPSALAPGGRYPYVAP 375
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,459,512
Number of Sequences: 369166
Number of extensions: 244219
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 68,354,980
effective HSP length: 23
effective length of database: 64,106,075
effective search space used: 1730864025
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)