Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_P11
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P32872|ALDHY_YEAST Aldehyde dehydrogenase 2, mitochondri... 30 2.1
sp|P28643|FABG_CUPLA 3-oxoacyl-[acyl-carrier-protein] reduc... 29 6.1
sp|P49419|AL7A1_HUMAN Aldehyde dehydrogenase family 7 membe... 28 7.9
>sp|P32872|ALDHY_YEAST Aldehyde dehydrogenase 2, mitochondrial precursor
Length = 511
Score = 30.4 bits (67), Expect = 2.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 300 VYEAISEEVSKYILETSPKGKYGNPNKPLVIFGPLVLKIQ 419
V+E+I +E+ + LE + K GNP + +GP +LKI+
Sbjct: 339 VHESIYDEIVERDLEKAKKQVLGNPFESDTRYGPQILKIE 378
>sp|P28643|FABG_CUPLA 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplast precursor
(3-ketoacyl-acyl carrier protein reductase)
Length = 320
Score = 28.9 bits (63), Expect = 6.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 312 ISEEVSKYILETSPKGKYGNPNK 380
+ ++++K ILET P G+YG P +
Sbjct: 268 LGDDINKKILETIPLGRYGQPEE 290
>sp|P49419|AL7A1_HUMAN Aldehyde dehydrogenase family 7 member A1 (Antiquitin-1)
Length = 511
Score = 28.5 bits (62), Expect = 7.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 300 VYEAISEEVSKYILETSPKGKYGNPNKPLVIFGPLVLK 413
++E+I +EV + + + + GNP P V++GPL K
Sbjct: 310 IHESIHDEVVNRLKKAYAQIRVGNPWDPNVLYGPLHTK 347
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,008,435
Number of Sequences: 369166
Number of extensions: 385030
Number of successful extensions: 831
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)