Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_O18
(230 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P32217|VC18_SWPVK Hypothetical protein C18 28 6.7
sp|Q9L0D7|RL2_STRCO 50S ribosomal protein L2 28 8.7
>sp|P32217|VC18_SWPVK Hypothetical protein C18
Length = 67
Score = 28.1 bits (61), Expect = 6.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 228 LIDLFCYYFYIVKFCIYFHVSWVPVFYKDLVHCNYHRFQY 109
L FCY+FYI K I H + Y L C ++++Y
Sbjct: 20 LYSSFCYFFYIEK--ILQHTKPIYTNYGQLCICKINKYKY 57
>sp|Q9L0D7|RL2_STRCO 50S ribosomal protein L2
Length = 278
Score = 27.7 bits (60), Expect = 8.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 150 KRREPKKHENKYRTSRYKSNNKR 218
+ R PKK NKY R K+N KR
Sbjct: 256 RTRSPKKASNKYIVRRRKTNKKR 278
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,305,033
Number of Sequences: 369166
Number of extensions: 273193
Number of successful extensions: 876
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1730500615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)