Planarian EST Database

DrC_00807

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00807 TTCGGCACGAGGAAAAAAGTAAGCCAAAGAAGAAGGTTTCAACCTTTACTCTTGACTGCA CCAACCCAGTTGAAGATGGAATTTTGGATATTTCAGTTTTTCATCAATACTTGAATGATA AAATCAAAATTAATAACAAACTTAACAATTTGGGCGATAGTCTTAATTTGAAAAAAGACA AATACGTCATCACTGTCCAAGCTAATGTTCCTTTTTCAAAGAGATATTTAAAATATTTGT CTAAGAAATTCTTGAAGAAACACACTTTGAGAGATTACTTAAGAGTTGTAGCTAAAGATA AAGAATCATATGAGCTCAGATATTTCAATGTTGCTGATGGCGCTGAAGACGACGAAGAAG TCGAAGAATAATTTTATTGAAATACAAATTTTTGGAT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00807
         (397 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50886|RL22_XENLA  60S ribosomal protein L22                    77   2e-14
sp|P67984|RL22_MOUSE  60S ribosomal protein L22 (Heparin bin...    75   4e-14
sp|P35268|RL22_HUMAN  60S ribosomal protein L22 (Epstein-Bar...    75   4e-14
sp|P47198|RL22_RAT  60S ribosomal protein L22                      73   2e-13
sp|P52865|RL22_GADMO  60S ribosomal protein L22                    72   3e-13
sp|P13732|RL22_TRIGR  60S ribosomal protein L22 (Development...    72   4e-13
sp|P50887|RL22_DROME  60S ribosomal protein L22                    69   3e-12
sp|Q9FE58|RL22C_ARATH  60S ribosomal protein L22-3                 67   1e-11
sp|Q9M9W1|RL22B_ARATH  60S ribosomal protein L22-2                 67   1e-11
sp|Q9SRX7|RL22A_ARATH  60S ribosomal protein L22-1                 56   2e-08

>sp|P50886|RL22_XENLA 60S ribosomal protein L22
          Length = 128

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
 Frame = +3

Query: 18  SKPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVIT 194
           SK KK++  FTLDCT+PVEDGI+D + F Q+              G   +++++ K  IT
Sbjct: 12  SKKKKQLLKFTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKIT 71

Query: 195 VQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
           V + VP                + LRD+LRVVA  KESYELRYF
Sbjct: 72  VSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115

>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin binding protein HBp15)
 sp|P67985|RL22_PIG 60S ribosomal protein L22 (Heparin binding protein HBp15)
          Length = 128

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
 Frame = +3

Query: 21  KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 197
           K KK+V  FTLDCT+PVEDGI+D + F Q+              G   + +++ K  ITV
Sbjct: 13  KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV 72

Query: 198 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
            + VP                + LRD+LRVVA  KESYELRYF
Sbjct: 73  TSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115

>sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Barr virus small RNA associated
           protein) (EBER associated protein) (EAP) (Heparin
           binding protein HBp15)
          Length = 128

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
 Frame = +3

Query: 21  KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 197
           K KK+V  FTLDCT+PVEDGI+D + F Q+              G   + +++ K  ITV
Sbjct: 13  KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV 72

Query: 198 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
            + VP                + LRD+LRVVA  KESYELRYF
Sbjct: 73  TSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115

>sp|P47198|RL22_RAT 60S ribosomal protein L22
          Length = 128

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 42/103 (40%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
 Frame = +3

Query: 21  KPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKYVITV 197
           K KK+V  FTLDCT+PVEDGI+D + F Q+              G   + +++ K  ITV
Sbjct: 13  KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITV 72

Query: 198 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
            +  P                + LRD+LRVVA  KESYELRYF
Sbjct: 73  TSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115

>sp|P52865|RL22_GADMO 60S ribosomal protein L22
          Length = 125

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 1/107 (0%)
 Frame = +3

Query: 9   EEKSKPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDS-LNLKKDKY 185
           ++  K KK++  FTLDCT+PVEDGI+D + F Q+              G+  +++++   
Sbjct: 6   KQGGKKKKQILKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKSGNLGNGVVSIERXXS 65

Query: 186 VITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
            I+V + VP                + LRD+LRVVA  KESYELRYF
Sbjct: 66  KISVNSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKESYELRYF 112

>sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development-specific protein 217)
          Length = 130

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 40/108 (37%), Positives = 55/108 (50%)
 Frame = +3

Query: 3   RHEEKSKPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDK 182
           R   K K KK+   FT+DCT PVEDGI+D S F Q+                ++ +++ K
Sbjct: 11  RPSGKGKKKKQTLKFTIDCTLPVEDGIMDASNFEQFLQERIKVNGKTKNLTTNIVIERKK 70

Query: 183 YVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
             +TV + +                 + LRD+LRVVA +KESYELRYF
Sbjct: 71  SKVTVTSEIAFSKRYLKYLTKKYLKKNNLRDWLRVVAANKESYELRYF 118

>sp|P50887|RL22_DROME 60S ribosomal protein L22
          Length = 299

 Score = 68.9 bits (167), Expect = 3e-12
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
 Frame = +3

Query: 15  KSKPKKKVST-FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVI 191
           K + KKKVS  FT+DCTN  ED I+D++ F +Y              G+++  ++ K  +
Sbjct: 182 KGQKKKKVSLRFTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKL 241

Query: 192 TVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 326
            V ++V                 ++LRD++RVVA +K+SYELRYF
Sbjct: 242 IVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYF 286

>sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3
          Length = 124

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
 Frame = +3

Query: 18  SKPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITV 197
           +K KKK  +FT+DC+ PV+D I++I+   ++              GDS+++ ++K  ITV
Sbjct: 9   AKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITV 68

Query: 198 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 329
            A+                  H +RD+LRV+A  KD+  YELRYFN
Sbjct: 69  TADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114

>sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2
          Length = 124

 Score = 67.0 bits (162), Expect = 1e-11
 Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
 Frame = +3

Query: 18  SKPKKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITV 197
           +K KKK  +FT+DC+ PV+D I++I+   ++              GDS+ + ++K  ITV
Sbjct: 9   AKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITV 68

Query: 198 QANVPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 329
            A+                  H +RD+LRV+A  KD+  YELRYFN
Sbjct: 69  TADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114

>sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1
          Length = 127

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
 Frame = +3

Query: 27  KKKVSTFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQAN 206
           KKK  +F +DC+ PV+D IL+I+   ++              G+S+++ +    I V AN
Sbjct: 14  KKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNAN 73

Query: 207 VPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYF 326
                             + LRD+LRV+A  KDK  YE+RYF
Sbjct: 74  SNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,918,403
Number of Sequences: 369166
Number of extensions: 438311
Number of successful extensions: 784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00807

Planaria EST Database

DrC_00807

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail