Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_D12
(368 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50886|RL22_XENLA 60S ribosomal protein L22 63 2e-10
sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin bin... 62 3e-10
sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Bar... 62 3e-10
sp|P47198|RL22_RAT 60S ribosomal protein L22 60 2e-09
sp|P52865|RL22_GADMO 60S ribosomal protein L22 59 3e-09
sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development... 58 6e-09
sp|P50887|RL22_DROME 60S ribosomal protein L22 56 2e-08
sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3 55 7e-08
sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2 54 9e-08
sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1 47 1e-05
>sp|P50886|RL22_XENLA 60S ribosomal protein L22
Length = 128
Score = 63.2 bits (152), Expect = 2e-10
Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 22 LHCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSL-NLKKDKYVITVQANVPXXXXX 198
L CT+PVEDGI+D + F Q+ G + ++++ K ITV + VP
Sbjct: 23 LDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKITVSSEVPFSKRY 82
Query: 199 XXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 297
+ LRD+LRVVA KESYELRYF
Sbjct: 83 LKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin binding protein HBp15)
sp|P67985|RL22_PIG 60S ribosomal protein L22 (Heparin binding protein HBp15)
Length = 128
Score = 62.4 bits (150), Expect = 3e-10
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 22 LHCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSL-NLKKDKYVITVQANVPXXXXX 198
L CT+PVEDGI+D + F Q+ G + +++ K ITV + VP
Sbjct: 23 LDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRY 82
Query: 199 XXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 297
+ LRD+LRVVA KESYELRYF
Sbjct: 83 LKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Barr virus small RNA associated
protein) (EBER associated protein) (EAP) (Heparin
binding protein HBp15)
Length = 128
Score = 62.4 bits (150), Expect = 3e-10
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 22 LHCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSL-NLKKDKYVITVQANVPXXXXX 198
L CT+PVEDGI+D + F Q+ G + +++ K ITV + VP
Sbjct: 23 LDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSKRY 82
Query: 199 XXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 297
+ LRD+LRVVA KESYELRYF
Sbjct: 83 LKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P47198|RL22_RAT 60S ribosomal protein L22
Length = 128
Score = 60.1 bits (144), Expect = 2e-09
Identities = 35/93 (37%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = +1
Query: 22 LHCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSL-NLKKDKYVITVQANVPXXXXX 198
L CT+PVEDGI+D + F Q+ G + +++ K ITV + P
Sbjct: 23 LDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEEPFSKRY 82
Query: 199 XXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 297
+ LRD+LRVVA KESYELRYF
Sbjct: 83 LKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P52865|RL22_GADMO 60S ribosomal protein L22
Length = 125
Score = 59.3 bits (142), Expect = 3e-09
Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +1
Query: 22 LHCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSL-NLKKDKYVITVQANVPXXXXX 198
L CT+PVEDGI+D + F Q+ G+ + ++++ I+V + VP
Sbjct: 20 LDCTHPVEDGIMDAANFEQFLQERIKVNGKSGNLGNGVVSIERXXSKISVNSEVPFSKRY 79
Query: 199 XXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 297
+ LRD+LRVVA KESYELRYF
Sbjct: 80 LKYLTKKYLKKNNLRDWLRVVANTKESYELRYF 112
>sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development-specific protein 217)
Length = 130
Score = 58.2 bits (139), Expect = 6e-09
Identities = 32/92 (34%), Positives = 46/92 (50%)
Frame = +1
Query: 22 LHCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXXXXX 201
+ CT PVEDGI+D S F Q+ ++ +++ K +TV + +
Sbjct: 27 IDCTLPVEDGIMDASNFEQFLQERIKVNGKTKNLTTNIVIERKKSKVTVTSEIAFSKRYL 86
Query: 202 XXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 297
+ LRD+LRVVA +KESYELRYF
Sbjct: 87 KYLTKKYLKKNNLRDWLRVVAANKESYELRYF 118
>sp|P50887|RL22_DROME 60S ribosomal protein L22
Length = 299
Score = 56.2 bits (134), Expect = 2e-08
Identities = 28/92 (30%), Positives = 47/92 (51%)
Frame = +1
Query: 22 LHCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXXXXX 201
+ CTN ED I+D++ F +Y G+++ ++ K + V ++V
Sbjct: 195 IDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHFSKAYL 254
Query: 202 XXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 297
++LRD++RVVA +K+SYELRYF
Sbjct: 255 KYLTKKYLKKNSLRDWIRVVANEKDSYELRYF 286
>sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3
Length = 124
Score = 54.7 bits (130), Expect = 7e-08
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Frame = +1
Query: 22 LHCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXXXXX 201
+ C+ PV+D I++I+ ++ GDS+++ ++K ITV A+
Sbjct: 20 IDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFSKRYL 79
Query: 202 XXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 300
H +RD+LRV+A KD+ YELRYFN
Sbjct: 80 KYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114
>sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2
Length = 124
Score = 54.3 bits (129), Expect = 9e-08
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 22 LHCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXXXXX 201
+ C+ PV+D I++I+ ++ GDS+ + ++K ITV A+
Sbjct: 20 IDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSKRYL 79
Query: 202 XXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 300
H +RD+LRV+A KD+ YELRYFN
Sbjct: 80 KYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114
>sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1
Length = 127
Score = 47.4 bits (111), Expect = 1e-05
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +1
Query: 19 LLHCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXXXX 198
++ C+ PV+D IL+I+ ++ G+S+++ + I V AN
Sbjct: 21 VIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFSKRY 80
Query: 199 XXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYF 297
+ LRD+LRV+A KDK YE+RYF
Sbjct: 81 LKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,426,690
Number of Sequences: 369166
Number of extensions: 363577
Number of successful extensions: 640
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)