Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_B06
(281 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50886|RL22_XENLA 60S ribosomal protein L22 46 3e-05
sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin bin... 45 5e-05
sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Bar... 45 5e-05
sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3 44 2e-04
sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2 43 2e-04
sp|P47198|RL22_RAT 60S ribosomal protein L22 43 3e-04
sp|P50887|RL22_DROME 60S ribosomal protein L22 40 0.002
sp|P52865|RL22_GADMO 60S ribosomal protein L22 40 0.002
sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development... 39 0.003
sp|P52819|RL22_CAEEL 60S ribosomal protein L22 36 0.031
>sp|P50886|RL22_XENLA 60S ribosomal protein L22
Length = 128
Score = 45.8 bits (107), Expect = 3e-05
Identities = 24/58 (41%), Positives = 32/58 (55%)
Frame = +1
Query: 37 GDSLNLKKDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 210
G +++++ K ITV + VP + LRD+LRVVA KESYELRYF
Sbjct: 58 GGVVSIERSKSKITVSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin binding protein HBp15)
sp|P67985|RL22_PIG 60S ribosomal protein L22 (Heparin binding protein HBp15)
Length = 128
Score = 45.1 bits (105), Expect = 5e-05
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +1
Query: 37 GDSLNLKKDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 210
G + +++ K ITV + VP + LRD+LRVVA KESYELRYF
Sbjct: 58 GGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Barr virus small RNA associated
protein) (EBER associated protein) (EAP) (Heparin
binding protein HBp15)
Length = 128
Score = 45.1 bits (105), Expect = 5e-05
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +1
Query: 37 GDSLNLKKDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 210
G + +++ K ITV + VP + LRD+LRVVA KESYELRYF
Sbjct: 58 GGVVTIERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3
Length = 124
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 37 GDSLNLKKDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYF 210
GDS+++ ++K ITV A+ H +RD+LRV+A KD+ YELRYF
Sbjct: 54 GDSVSITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113
Query: 211 N 213
N
Sbjct: 114 N 114
>sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2
Length = 124
Score = 43.1 bits (100), Expect = 2e-04
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 37 GDSLNLKKDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYF 210
GDS+ + ++K ITV A+ H +RD+LRV+A KD+ YELRYF
Sbjct: 54 GDSVTITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113
Query: 211 N 213
N
Sbjct: 114 N 114
>sp|P47198|RL22_RAT 60S ribosomal protein L22
Length = 128
Score = 42.7 bits (99), Expect = 3e-04
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +1
Query: 37 GDSLNLKKDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 210
G + +++ K ITV + P + LRD+LRVVA KESYELRYF
Sbjct: 58 GGVVTIERSKSKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P50887|RL22_DROME 60S ribosomal protein L22
Length = 299
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/58 (32%), Positives = 33/58 (56%)
Frame = +1
Query: 37 GDSLNLKKDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 210
G+++ ++ K + V ++V ++LRD++RVVA +K+SYELRYF
Sbjct: 229 GNNVTFERSKLKLIVSSDVHFSKAYLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYF 286
>sp|P52865|RL22_GADMO 60S ribosomal protein L22
Length = 125
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +1
Query: 46 LNLKKDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 210
+++++ I+V + VP + LRD+LRVVA KESYELRYF
Sbjct: 58 VSIERXXSKISVNSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKESYELRYF 112
>sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development-specific protein 217)
Length = 130
Score = 39.3 bits (90), Expect = 0.003
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 52 LKKDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 210
+++ K +TV + + + LRD+LRVVA +KESYELRYF
Sbjct: 66 IERKKSKVTVTSEIAFSKRYLKYLTKKYLKKNNLRDWLRVVAANKESYELRYF 118
>sp|P52819|RL22_CAEEL 60S ribosomal protein L22
Length = 130
Score = 35.8 bits (81), Expect = 0.031
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = +1
Query: 40 DSLNLKKDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYFN 213
+++ ++ K ++V + VP ++LRD+LRVVA +K +YE+RYF+
Sbjct: 61 NNVKVEVAKSKVSVVSEVPFSKRYLKYLTKKYLKRNSLRDWLRVVAVNKNTYEVRYFH 118
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,700,368
Number of Sequences: 369166
Number of extensions: 187148
Number of successful extensions: 353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 68,354,980
effective HSP length: 63
effective length of database: 56,716,675
effective search space used: 1701500250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)