Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G09
(226 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50886|RL22_XENLA 60S ribosomal protein L22 43 3e-04
sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin bin... 42 3e-04
sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Bar... 42 3e-04
sp|P47198|RL22_RAT 60S ribosomal protein L22 40 0.002
sp|P52865|RL22_GADMO 60S ribosomal protein L22 40 0.002
sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development... 38 0.006
sp|P50887|RL22_DROME 60S ribosomal protein L22 37 0.011
sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3 36 0.024
sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2 36 0.024
sp|Q09668|RL22_SCHPO 60S ribosomal protein L22 35 0.040
>sp|P50886|RL22_XENLA 60S ribosomal protein L22
Length = 128
Score = 42.7 bits (99), Expect = 3e-04
Identities = 23/51 (45%), Positives = 27/51 (52%)
Frame = +3
Query: 3 KDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 155
+ K ITV + VP + LRD+LRVVA KESYELRYF
Sbjct: 65 RSKSKITVSSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin binding protein HBp15)
sp|P67985|RL22_PIG 60S ribosomal protein L22 (Heparin binding protein HBp15)
Length = 128
Score = 42.4 bits (98), Expect = 3e-04
Identities = 23/51 (45%), Positives = 27/51 (52%)
Frame = +3
Query: 3 KDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 155
+ K ITV + VP + LRD+LRVVA KESYELRYF
Sbjct: 65 RSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Barr virus small RNA associated
protein) (EBER associated protein) (EAP) (Heparin
binding protein HBp15)
Length = 128
Score = 42.4 bits (98), Expect = 3e-04
Identities = 23/51 (45%), Positives = 27/51 (52%)
Frame = +3
Query: 3 KDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 155
+ K ITV + VP + LRD+LRVVA KESYELRYF
Sbjct: 65 RSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P47198|RL22_RAT 60S ribosomal protein L22
Length = 128
Score = 40.0 bits (92), Expect = 0.002
Identities = 22/51 (43%), Positives = 26/51 (50%)
Frame = +3
Query: 3 KDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 155
+ K ITV + P + LRD+LRVVA KESYELRYF
Sbjct: 65 RSKSKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYF 115
>sp|P52865|RL22_GADMO 60S ribosomal protein L22
Length = 125
Score = 39.7 bits (91), Expect = 0.002
Identities = 21/46 (45%), Positives = 25/46 (54%)
Frame = +3
Query: 18 ITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYF 155
I+V + VP + LRD+LRVVA KESYELRYF
Sbjct: 67 ISVNSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKESYELRYF 112
>sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development-specific protein 217)
Length = 130
Score = 38.1 bits (87), Expect = 0.006
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3
Query: 90 HTLRDYLRVVAKDKESYELRYF 155
+ LRD+LRVVA +KESYELRYF
Sbjct: 97 NNLRDWLRVVAANKESYELRYF 118
>sp|P50887|RL22_DROME 60S ribosomal protein L22
Length = 299
Score = 37.4 bits (85), Expect = 0.011
Identities = 15/22 (68%), Positives = 21/22 (95%)
Frame = +3
Query: 90 HTLRDYLRVVAKDKESYELRYF 155
++LRD++RVVA +K+SYELRYF
Sbjct: 265 NSLRDWIRVVANEKDSYELRYF 286
>sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3
Length = 124
Score = 36.2 bits (82), Expect = 0.024
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 3 KDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 158
++K ITV A+ H +RD+LRV+A KD+ YELRYFN
Sbjct: 61 REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114
>sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2
Length = 124
Score = 36.2 bits (82), Expect = 0.024
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 3 KDKYVITVQANVPXXXXXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFN 158
++K ITV A+ H +RD+LRV+A KD+ YELRYFN
Sbjct: 61 REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFN 114
>sp|Q09668|RL22_SCHPO 60S ribosomal protein L22
Length = 117
Score = 35.4 bits (80), Expect = 0.040
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +3
Query: 90 HTLRDYLRVVAKDKESYELRYFN 158
H+LRD+LRVV+ K YELRY+N
Sbjct: 85 HSLRDWLRVVSTKKGVYELRYYN 107
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,213,732
Number of Sequences: 369166
Number of extensions: 134304
Number of successful extensions: 274
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 68,354,980
effective HSP length: 46
effective length of database: 59,857,170
effective search space used: 1676000760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)