Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_O21
(359 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50886|RL22_XENLA 60S ribosomal protein L22 71 7e-13
sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin bin... 70 1e-12
sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Bar... 70 1e-12
sp|P47198|RL22_RAT 60S ribosomal protein L22 68 6e-12
sp|P52865|RL22_GADMO 60S ribosomal protein L22 67 1e-11
sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development... 66 2e-11
sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3 65 4e-11
sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2 65 5e-11
sp|P50887|RL22_DROME 60S ribosomal protein L22 65 6e-11
sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1 55 5e-08
>sp|P50886|RL22_XENLA 60S ribosomal protein L22
Length = 128
Score = 71.2 bits (173), Expect = 7e-13
Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = +1
Query: 7 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSL-NLKKDKYVITVQANVPXXX 183
FTLDCT+PVEDGI+D + F Q+ G + ++++ K ITV + VP
Sbjct: 21 FTLDCTHPVEDGIMDAANFEQFLHDRIKVNGKVGNLGGGVVSIERSKSKITVSSEVPFSK 80
Query: 184 XXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYFNV 294
+ LRD+LRVVA KESYELRYF +
Sbjct: 81 RYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQI 117
>sp|P67984|RL22_MOUSE 60S ribosomal protein L22 (Heparin binding protein HBp15)
sp|P67985|RL22_PIG 60S ribosomal protein L22 (Heparin binding protein HBp15)
Length = 128
Score = 70.5 bits (171), Expect = 1e-12
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +1
Query: 7 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSL-NLKKDKYVITVQANVPXXX 183
FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV + VP
Sbjct: 21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSK 80
Query: 184 XXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYFNV 294
+ LRD+LRVVA KESYELRYF +
Sbjct: 81 RYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQI 117
>sp|P35268|RL22_HUMAN 60S ribosomal protein L22 (Epstein-Barr virus small RNA associated
protein) (EBER associated protein) (EAP) (Heparin
binding protein HBp15)
Length = 128
Score = 70.5 bits (171), Expect = 1e-12
Identities = 39/97 (40%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +1
Query: 7 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSL-NLKKDKYVITVQANVPXXX 183
FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV + VP
Sbjct: 21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPFSK 80
Query: 184 XXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYFNV 294
+ LRD+LRVVA KESYELRYF +
Sbjct: 81 RYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQI 117
>sp|P47198|RL22_RAT 60S ribosomal protein L22
Length = 128
Score = 68.2 bits (165), Expect = 6e-12
Identities = 38/97 (39%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +1
Query: 7 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSL-NLKKDKYVITVQANVPXXX 183
FTLDCT+PVEDGI+D + F Q+ G + +++ K ITV + P
Sbjct: 21 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEEPFSK 80
Query: 184 XXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYFNV 294
+ LRD+LRVVA KESYELRYF +
Sbjct: 81 RYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQI 117
>sp|P52865|RL22_GADMO 60S ribosomal protein L22
Length = 125
Score = 67.4 bits (163), Expect = 1e-11
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Frame = +1
Query: 7 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSL-NLKKDKYVITVQANVPXXX 183
FTLDCT+PVEDGI+D + F Q+ G+ + ++++ I+V + VP
Sbjct: 18 FTLDCTHPVEDGIMDAANFEQFLQERIKVNGKSGNLGNGVVSIERXXSKISVNSEVPFSK 77
Query: 184 XXXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYFNV 294
+ LRD+LRVVA KESYELRYF +
Sbjct: 78 RYLKYLTKKYLKKNNLRDWLRVVANTKESYELRYFQI 114
>sp|P13732|RL22_TRIGR 60S ribosomal protein L22 (Development-specific protein 217)
Length = 130
Score = 66.2 bits (160), Expect = 2e-11
Identities = 35/96 (36%), Positives = 50/96 (52%)
Frame = +1
Query: 7 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXXX 186
FT+DCT PVEDGI+D S F Q+ ++ +++ K +TV + +
Sbjct: 25 FTIDCTLPVEDGIMDASNFEQFLQERIKVNGKTKNLTTNIVIERKKSKVTVTSEIAFSKR 84
Query: 187 XXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYFNV 294
+ LRD+LRVVA +KESYELRYF +
Sbjct: 85 YLKYLTKKYLKKNNLRDWLRVVAANKESYELRYFQI 120
>sp|Q9FE58|RL22C_ARATH 60S ribosomal protein L22-3
Length = 124
Score = 65.5 bits (158), Expect = 4e-11
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Frame = +1
Query: 4 TFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXX 183
+FT+DC+ PV+D I++I+ ++ GDS+++ ++K ITV A+
Sbjct: 17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFSK 76
Query: 184 XXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFNVAD 300
H +RD+LRV+A KD+ YELRYFN+A+
Sbjct: 77 RYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAE 117
>sp|Q9M9W1|RL22B_ARATH 60S ribosomal protein L22-2
Length = 124
Score = 65.1 bits (157), Expect = 5e-11
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Frame = +1
Query: 4 TFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXX 183
+FT+DC+ PV+D I++I+ ++ GDS+ + ++K ITV A+
Sbjct: 17 SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFSK 76
Query: 184 XXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFNVAD 300
H +RD+LRV+A KD+ YELRYFN+A+
Sbjct: 77 RYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAE 117
>sp|P50887|RL22_DROME 60S ribosomal protein L22
Length = 299
Score = 64.7 bits (156), Expect = 6e-11
Identities = 31/97 (31%), Positives = 52/97 (53%)
Frame = +1
Query: 7 FTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXXX 186
FT+DCTN ED I+D++ F +Y G+++ ++ K + V ++V
Sbjct: 193 FTIDCTNIAEDSIMDVADFEKYIKARLKVNGKVNNLGNNVTFERSKLKLIVSSDVHFSKA 252
Query: 187 XXXXXXXXXXXXHTLRDYLRVVAKDKESYELRYFNVA 297
++LRD++RVVA +K+SYELRYF ++
Sbjct: 253 YLKYLTKKYLKKNSLRDWIRVVANEKDSYELRYFRIS 289
>sp|Q9SRX7|RL22A_ARATH 60S ribosomal protein L22-1
Length = 127
Score = 55.1 bits (131), Expect = 5e-08
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +1
Query: 4 TFTLDCTNPVEDGILDISVFHQYXXXXXXXXXXXXXXGDSLNLKKDKYVITVQANVPXXX 183
+F +DC+ PV+D IL+I+ ++ G+S+++ + I V AN
Sbjct: 19 SFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFSK 78
Query: 184 XXXXXXXXXXXXXHTLRDYLRVVA--KDKESYELRYFNVAD 300
+ LRD+LRV+A KDK YE+RYF + D
Sbjct: 79 RYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDD 119
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,705,190
Number of Sequences: 369166
Number of extensions: 350239
Number of successful extensions: 614
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)